PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7534_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 290aa    MW: 31237.2 Da    PI: 9.8479
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7534_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49.2e-0797121226
                                          -S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                          k ++C++f     C++G++C+F+H+
  cra_locus_7534_iso_5_len_1639_ver_3  97 KSKICNRFNTPEGCRFGNKCHFSHS 121
                                          5679********************8 PP
2zf-CCCH31.43.3e-10258281226
                                          -S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                          k + C +fa+ G C++G+rC+FaH+
  cra_locus_7534_iso_5_len_1639_ver_3 258 KSKMCENFAK-GSCSFGERCHFAHS 281
                                          5678******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.63663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.7423664IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-53764IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-63861IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.395123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-695122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-896122IPR000571Zinc finger, CCCH-type
SMARTSM003560.3697122IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.19E-14155232IPR004088K Homology domain, type 1
SMARTSM003221.1E-10161231IPR004087K Homology domain
PROSITE profilePS5008413.523162226IPR004088K Homology domain, type 1
CDDcd001056.28E-13164227No hitNo description
Gene3DG3DSA:3.30.1370.102.6E-14164230IPR004088K Homology domain, type 1
PfamPF000132.4E-9165227IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.106.7E-14255289IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-5256282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.122256283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-8256287IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-7262281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0008418Molecular Functionprotein-N-terminal asparagine amidohydrolase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEFAGRKRDR LEGALYGSEA FKKSRDETES FTTGVGSKSK PCTKFFSTSG CQFGEGCHFL  60
HYLPGYSAVS QLSNASGNQA MPVGRNIPFG DGPTPVKSKI CNRFNTPEGC RFGNKCHFSH  120
SDSKPMAPGY EDPRGMRPRS RFSAQLDQNN PSLGVAASFG TFASTKMNID AAIVGVVIGK  180
NGANSKQVCR QTGVKLSIKD HESDPHQRNI VLEGTFDQIK EASIMLKDLI LSVGGGSGHL  240
RVPTGSFARA AAPSRQTKSK MCENFAKGSC SFGERCHFAH SAGELRRPPA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027161488.11e-140zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R06e-90C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A068UHN41e-140A0A068UHN4_COFCA; Uncharacterized protein
STRINGVIT_13s0156g00320.t011e-117(Vitis vinifera)