PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7552_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 383aa    MW: 41667.5 Da    PI: 5.251
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7552_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.8e-21203252255
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                          +y+GVr+++ +g+W+AeIrdp     +  r++lg+f taeeAaka+++a+k+++g
  cra_locus_7552_iso_1_len_1494_ver_3 203 RYRGVRQRP-WGKWAAEIRDPH----KgVRVWLGTFNTAEEAAKAYDEAAKRIRG 252
                                          7********.**********72....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-22203260IPR016177DNA-binding domain
SMARTSM003801.3E-39203266IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-32203260IPR001471AP2/ERF domain
PROSITE profilePS5103224.263203260IPR001471AP2/ERF domain
PfamPF008479.6E-15203252IPR001471AP2/ERF domain
PRINTSPR003671.4E-11204215IPR001471AP2/ERF domain
CDDcd000185.28E-26211259No hitNo description
PRINTSPR003671.4E-11226242IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
XQQQQPQQQQ EFGQSRNFLT AEELQQLEQT DYLLSMAAPM FPAYSQTREM SEIVAALTNV  60
VSGQRSSAGE LNFNRPELIS GGGGAGAGGA AANSPSSAYS SSSSGSWAGQ KRGRGDQDDT  120
VSGFPERVFR GFDEFRAGDS SSSAIPPAHD EAVSHVMTPT TTTTTASTVT TTVRGRNPPQ  180
EAPAAAAGAT SSFDQESGER RRRYRGVRQR PWGKWAAEIR DPHKGVRVWL GTFNTAEEAA  240
KAYDEAAKRI RGDKAKLNFP PPDQHHHHHP PPPLPPPPLL HTPQPSPKRR CTEMPPPVMD  300
YYAPATNMTP YDDLKDQFSS LESFLGLEPE ITTLSSSTTM TTTTSSTAGN EFVGGMNESD  360
PVDLWMMNEL VSVQGQNNQD FLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22204260663ATERF1
3gcc_A4e-22204260663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203ERRRRY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027115979.15e-50ethylene-responsive transcription factor RAP2-3-like isoform X1
RefseqXP_027121050.15e-50ethylene-responsive transcription factor RAP2-3-like isoform X1
TrEMBLA0A2G9GY135e-49A0A2G9GY13_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000163061e-46(Solanum tuberosum)