PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7552_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 271aa    MW: 30332 Da    PI: 7.2156
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7552_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.13.3e-2191140255
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                          +y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAaka+++a+k+++g
  cra_locus_7552_iso_4_len_1259_ver_3  91 KYRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTFNTAEEAAKAYDEAAKRIRG 140
                                          8********.**********72....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1491140IPR001471AP2/ERF domain
CDDcd000182.34E-3291147No hitNo description
SMARTSM003801.5E-3991154IPR001471AP2/ERF domain
PROSITE profilePS5103224.02691148IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2291148IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-3291148IPR001471AP2/ERF domain
PRINTSPR003671.1E-1192103IPR001471AP2/ERF domain
PRINTSPR003671.1E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MCGGAIISDE LLPSINGRRK LTTKELWAEL DTFSEFWGFD PNSTSTQTAD NNNSKASSSS  60
QKNKQLKKGG SSDEKEGEIM KVANKRVRKN KYRGIRQRPW GKWAAEIRDP HKGVRVWLGT  120
FNTAEEAAKA YDEAAKRIRG DKAKLNFPPP DQHHHHHPPP PLPPPPLLHT PQPSPKRRCT  180
EMPPPVMDYY APATNMTPYD DLKDQFSSLE SFLGLEPEIT TLSSSTTMTT TTSSTAGNEF  240
VGGMNESDPV DLWMMNELVS VQGQNNQDFL Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2392148360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027115980.15e-74ethylene-responsive transcription factor RAP2-3-like isoform X2
RefseqXP_027121051.15e-74ethylene-responsive transcription factor RAP2-3-like isoform X2
TrEMBLA0A068TRG98e-72A0A068TRG9_COFCA; Uncharacterized protein