PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7589_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 495aa MW: 53526.6 Da PI: 7.2706

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7589_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3e-06	86	98	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 C+yG+rCkF H+ cra_locus_7589_iso_2_len_1925_ver_3 86 SCQYGERCKFLHV 98 6***********6 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
GCVNDMNNLK FLPKLVKTEH SKVSHSILLS GKXNFFFLFL SSAEIKLCLQ EKNSAGILRA 60 AGEWSXCLFR FLFEISSLEL GSVNLSCQYG ERCKFLHVSP QPSKLNPFGF GTQTGNQLPH 120 TNLQAQKTNP FGFGVQNHSQ SRGASEFGAK QNQFKPFENK WTRFSPVNAS NSSASRQPDN 180 QSVAPSHKCT DPESCKRQIV EDFEQERPLW KLTCYGHSKN GPCDIVGDLS YEELRAAAYD 240 DAKRGLNLQS IVEKERNLLN SKLLEFENLV RNPFKSQPNS ALNPQNPLQS GIQNAPVIST 300 SSNPPAFSSF SQFGASVNSG AAAAAAPNSL FGQSNPFQNN SQTSSTFQTN SSSSGALGSF 360 GSQFPHQLFG SHSSSFGSNS VSVQKNPFPT SATSLQISAS AGDNSGPSSL PNGIGSSMNM 420 NNLRTHTATE SKGGDDSIWM KEEWSIGEIP EEAPPEDIAD NCXYYLAARA EFGGAGIYHL 480 SGRKPGDLSS ALFGV

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

GCVNDMNNLK FLPKLVKTEH SKVSHSILLS GKXNFFFLFL SSAEIKLCLQ EKNSAGILRA  60
AGEWSXCLFR FLFEISSLEL GSVNLSCQYG ERCKFLHVSP QPSKLNPFGF GTQTGNQLPH  120
TNLQAQKTNP FGFGVQNHSQ SRGASEFGAK QNQFKPFENK WTRFSPVNAS NSSASRQPDN  180
QSVAPSHKCT DPESCKRQIV EDFEQERPLW KLTCYGHSKN GPCDIVGDLS YEELRAAAYD  240
DAKRGLNLQS IVEKERNLLN SKLLEFENLV RNPFKSQPNS ALNPQNPLQS GIQNAPVIST  300
SSNPPAFSSF SQFGASVNSG AAAAAAPNSL FGQSNPFQNN SQTSSTFQTN SSSSGALGSF  360
GSQFPHQLFG SHSSSFGSNS VSVQKNPFPT SATSLQISAS AGDNSGPSSL PNGIGSSMNM  420
NNLRTHTATE SKGGDDSIWM KEEWSIGEIP EEAPPEDIAD NCXYYLAARA EFGGAGIYHL  480
SGRKPGDLSS ALFGV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027175684.1	1e-133	zinc finger CCCH domain-containing protein 16 isoform X2
TrEMBL	A0A068V326	1e-132	A0A068V326_COFCA; Uncharacterized protein
STRING	VIT_09s0070g00470.t01	1e-115	(Vitis vinifera)