PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7589_iso_7

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 484aa MW: 52842.3 Da PI: 6.505

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7589_iso_7	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	2.9e-06	75	87	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 C+yG+rCkF H+ cra_locus_7589_iso_7_len_1893_ver_3 75 SCQYGERCKFLHV 87 6***********6 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
RRQWIIIXLW NHFCQIIDLH VIWHSDSLSE GLNQTXLLVT NTWFSIYSYS GEWSXCLFRF 60 LFEISSLELG SVNLSCQYGE RCKFLHVSPQ PSKLNPFGFG TQTGNQLPHT NLQAQKTNPF 120 GFGVQNHSQS RGASEFGAKQ NQFKPFENKW TRFSPVNASN SSASRQPDNQ SVAPSHKCTD 180 PESCKRQIVE DFEQERPLWK LTCYGHSKNG PCDIVGDLSY EELRAAAYDD AKRGLNLQSI 240 VEKERNLLNS KLLEFENLVR NPFKSQPNSA LNPQNPLQSG IQNAPVISTS SNPPAFSSFS 300 QFGASVNSGA AAAAAPNSLF GQSNPFQNNS QTSSTFQTNS SSSGALGSFG SQFPHQLFGS 360 HSSSFGSNSV SVQKNPFPTS ATSLQISASA GDNSGPSSLP NGIGSSMNMN NLRTHTATES 420 KGGDDSIWMK EEWSIGEIPE EAPPEDIADN CXYYLAARAE FGGAGIYHLS GRKPGDLSSA 480 LFGV

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

RRQWIIIXLW NHFCQIIDLH VIWHSDSLSE GLNQTXLLVT NTWFSIYSYS GEWSXCLFRF  60
LFEISSLELG SVNLSCQYGE RCKFLHVSPQ PSKLNPFGFG TQTGNQLPHT NLQAQKTNPF  120
GFGVQNHSQS RGASEFGAKQ NQFKPFENKW TRFSPVNASN SSASRQPDNQ SVAPSHKCTD  180
PESCKRQIVE DFEQERPLWK LTCYGHSKNG PCDIVGDLSY EELRAAAYDD AKRGLNLQSI  240
VEKERNLLNS KLLEFENLVR NPFKSQPNSA LNPQNPLQSG IQNAPVISTS SNPPAFSSFS  300
QFGASVNSGA AAAAAPNSLF GQSNPFQNNS QTSSTFQTNS SSSGALGSFG SQFPHQLFGS  360
HSSSFGSNSV SVQKNPFPTS ATSLQISASA GDNSGPSSLP NGIGSSMNMN NLRTHTATES  420
KGGDDSIWMK EEWSIGEIPE EAPPEDIADN CXYYLAARAE FGGAGIYHLS GRKPGDLSSA  480
LFGV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027175684.1	1e-133	zinc finger CCCH domain-containing protein 16 isoform X2
TrEMBL	A0A068V326	1e-132	A0A068V326_COFCA; Uncharacterized protein
STRING	VIT_09s0070g00470.t01	1e-114	(Vitis vinifera)