PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7589_iso_8

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 413aa MW: 44331.3 Da PI: 6.7815

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7589_iso_8	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2e-06	4	16	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 C+yG+rCkF H+ cra_locus_7589_iso_8_len_1821_ver_3 4 SCQYGERCKFLHV 16 7***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.437	1	18	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MSSSCQYGER CKFLHVSPQP SKLNPFGFGT QTGNQLPHTN LQAQKTNPFG FGVQNHSQSR 60 GASEFGAKQN QFKPFENKWT RFSPVNASNS SASRQPDNQS VAPSHKCTDP ESCKRQIVED 120 FEQERPLWKL TCYGHSKNGP CDIVGDLSYE ELRAAAYDDA KRGLNLQSIV EKERNLLNSK 180 LLEFENLVRN PFKSQPNSAL NPQNPLQSGI QNAPVISTSS NPPAFSSFSQ FGASVNSGAA 240 AAAAPNSLFG QSNPFQNNSQ TSSTFQTNSS SSGALGSFGS QFPHQLFGSH SSSFGSNSVS 300 VQKNPFPTSA TSLQISASAG DNSGPSSLPN GIGSSMNMNN LRTHTATESK GGDDSIWMKE 360 EWSIGEIPEE APPEDIADNC XYYLAARAEF GGAGIYHLSG RKPGDLSSAL FGV

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MSSSCQYGER CKFLHVSPQP SKLNPFGFGT QTGNQLPHTN LQAQKTNPFG FGVQNHSQSR  60
GASEFGAKQN QFKPFENKWT RFSPVNASNS SASRQPDNQS VAPSHKCTDP ESCKRQIVED  120
FEQERPLWKL TCYGHSKNGP CDIVGDLSYE ELRAAAYDDA KRGLNLQSIV EKERNLLNSK  180
LLEFENLVRN PFKSQPNSAL NPQNPLQSGI QNAPVISTSS NPPAFSSFSQ FGASVNSGAA  240
AAAAPNSLFG QSNPFQNNSQ TSSTFQTNSS SSGALGSFGS QFPHQLFGSH SSSFGSNSVS  300
VQKNPFPTSA TSLQISASAG DNSGPSSLPN GIGSSMNMNN LRTHTATESK GGDDSIWMKE  360
EWSIGEIPEE APPEDIADNC XYYLAARAEF GGAGIYHLSG RKPGDLSSAL FGV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027072968.1	1e-136	zinc finger CCCH domain-containing protein 16 isoform X3
TrEMBL	A0A068V326	1e-134	A0A068V326_COFCA; Uncharacterized protein
STRING	VIT_09s0070g00470.t01	1e-116	(Vitis vinifera)