PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7589_iso_9
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 213aa    MW: 24182.3 Da    PI: 9.8734
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7589_iso_9genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-115073226
                                        -S---SGGGGTS--TTTTT-SS-SS CS
                             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                        + elCr+f r G C+yG+rCkF H+
  cra_locus_7589_iso_9_len_699_ver_3 50 RKELCRNFTR-GSCQYGERCKFLHV 73
                                        789*******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.19E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.2064875IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-64974IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-95073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-85272IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
GCVNDMNNLK FLPKLVKTEH SKVSHSILLS GKKFLLPIPE QCGDQIMPPR KELCRNFTRG  60
SCQYGERCKF LHVSPQPSKL NPFGFGTQTG NQLPHTNLQA QKTNPFGFGV QNHSQSRGAS  120
EFGAKQNQFK PFENKWTRFS PVNASNSSAS RQPDNQSVAP SHKCTDPESC KRQIVEDFEQ  180
ERPLWKLTCY GHSKKYAITN YHCNHIRIAN TFQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175683.11e-76zinc finger CCCH domain-containing protein 16 isoform X1
RefseqXP_027175684.11e-76zinc finger CCCH domain-containing protein 16 isoform X2
SwissprotQ9FWS33e-34C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A068V3262e-75A0A068V326_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000075028e-65(Solanum tuberosum)