PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7592_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 419aa MW: 46833.9 Da PI: 4.5576

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7592_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	103	119	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 y Cp+Cgk+++ + L+ cra_locus_7592_iso_3_len_1588_ver_3 103 YICPNCGKRYNALDALR 119 89********9998885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00531	2.1E-28	1	151	IPR002853	Transcription initiation factor IIE subunit alpha, N-terminal
Gene3D	G3DSA:3.30.40.10	7.9E-19	89	148	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57783	3.74E-8	90	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006367	Biological Process	transcription initiation from RNA polymerase II promoter
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
XIVGFQLHLL LFDKNFVCSM LPYHSVICIL TDSERSKNIN AAVAATIDGQ QTGREGDEKV 60 KMHTHSYCCL DYAQIYDVVR YRLHRMRKKL KDELDNKNTV LEYICPNCGK RYNALDALRL 120 ISMDDEDFHC EICNGVLEVD SGKLASQEIG DGDDNAKRRH RDKLEDLLKK MEVQLKPLME 180 QLNRVKDLPV PEFGNLQAWE ARASAAARAA NGDLSNDPSK SSQGLGFGGT PMPFLGETKV 240 EVAFSGLEEK GNIKSEGASA PLKVLPPWMI KQGMNLTKEQ RGEVKEEGKM DGSRAPAGAS 300 DEKKSATEKH DEKNIQDEYV KAYYAALLQR QREQEVSVKK EEELPNSNPL SGDYGTSNER 360 QVGMKSKRED EDDGDDVEWE EEATAGNTSK PFKVNDLNVQ ADADDATGDD EDDDGIDWE

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

XIVGFQLHLL LFDKNFVCSM LPYHSVICIL TDSERSKNIN AAVAATIDGQ QTGREGDEKV  60
KMHTHSYCCL DYAQIYDVVR YRLHRMRKKL KDELDNKNTV LEYICPNCGK RYNALDALRL  120
ISMDDEDFHC EICNGVLEVD SGKLASQEIG DGDDNAKRRH RDKLEDLLKK MEVQLKPLME  180
QLNRVKDLPV PEFGNLQAWE ARASAAARAA NGDLSNDPSK SSQGLGFGGT PMPFLGETKV  240
EVAFSGLEEK GNIKSEGASA PLKVLPPWMI KQGMNLTKEQ RGEVKEEGKM DGSRAPAGAS  300
DEKKSATEKH DEKNIQDEYV KAYYAALLQR QREQEVSVKK EEELPNSNPL SGDYGTSNER  360
QVGMKSKRED EDDGDDVEWE EEATAGNTSK PFKVNDLNVQ ADADDATGDD EDDDGIDWE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fyw_W	8e-12	67	240	86	244	TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA
5fz5_W	8e-12	67	240	86	244	TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA
5sva_h	8e-12	67	240	86	244	Transcription initiation factor IIE subunit alpha
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027169764.1	0.0	general transcription factor IIE subunit 1 isoform X2
TrEMBL	A0A068TQ74	0.0	A0A068TQ74_COFCA; Uncharacterized protein
STRING	Gorai.007G172700.1	0.0	(Gossypium raimondii)