PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7610_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 61aa MW: 6747.72 Da PI: 4.8191

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7610_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.8	3.9e-11	16	51	1	37
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 +g+WT eEd++l+++++ +G g W++ ar g +++l cra_locus_7610_iso_4_len_1164_ver_3 16 KGPWTMEEDLILINYIANHGEGVWNSLARSAG-TLSL 51 79******************************.9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-12	8	45	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.64E-8	8	45	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.039	11	44	IPR017877	Myb-like domain
Pfam	PF00249	7.8E-9	16	50	IPR001005	SANT/Myb domain
CDD	cd00167	1.58E-5	18	48	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 61 aa Download sequence Send to blast
MDKKPGNNSQ DVEVRKGPWT MEEDLILINY IANHGEGVWN SLARSAGTLS LIICSSTIIF 60 I

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022023239.1	8e-25	myb-related protein 305-like
Swissprot	P81391	3e-24	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A251RP86	2e-23	A0A251RP86_HELAN; Putative myb protein
TrEMBL	A0A2G9GAJ3	2e-23	A0A2G9GAJ3_9LAMI; Uncharacterized protein
STRING	XP_004489258.1	2e-22	(Cicer arietinum)

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]