PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7610_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 151aa MW: 16611.9 Da PI: 6.6028

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7610_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.9	4.1e-12	26	54	16	46
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++G++ W++Ia++++ gRt++++k++w++ cra_locus_7610_iso_6_len_1377_ver_3 26 AAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 54 5799*.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.417	1	60	IPR017930	Myb domain
CDD	cd00167	5.78E-9	25	54	No hit	No description
Pfam	PF00249	3.4E-10	26	54	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.58E-10	26	63	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.2E-14	27	56	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MAELPSTGRS EGKYNTGGAV VDHGAAAKWG NRWSKIAKHL PGRTDNEIKN YWRTRIQKHI 60 KQAENNFTGQ SSNEQNHDQG STSQMSTTSS SHHHHNHAGG GGGGDAVETY SPPSYQANFE 120 AAFQNPFPTD QSTDNIWSME DLWPMQLLSG D

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022884021.1	2e-46	myb-related protein 305-like
Refseq	XP_027073189.1	1e-46	myb-related protein 305-like
Swissprot	P81391	3e-37	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A068U0Q2	3e-45	A0A068U0Q2_COFCA; Uncharacterized protein
STRING	XP_009618404.1	1e-42	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]