PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7618_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 128aa MW: 14911.7 Da PI: 10.6368

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7618_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.3	1.7e-19	40	122	12	97
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 k+ v+p +f ++h +++ e ++l+d++g++W v++ +r+ +++ +l+kGW++F+++++L gD++ F+l+ cra_locus_7618_iso_2_len_1061_ver_3 40 KKEKGVIPCEFSNKHPLNNVE--NIMLQDSDGKEWPVRC-IRRLGKAAWLSKGWRNFAQEKKLVCGDVCCFELI 110 444469*******888777..5***********.57777789**********************99 PP SS.SEE..EEEEE CS B3 86 gr.sefelvvkvf 97 + + f ++++vf cra_locus_7618_iso_2_len_1061_ver_3 111 QGnEPF-FKISVF 122 753555.566655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.774	29	125	IPR003340	B3 DNA binding domain
SMART	SM01019	2.3E-9	31	125	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.1E-17	40	120	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.14E-18	42	122	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.5E-20	42	122	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.27E-17	45	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MNWERKHQKK KPIACGAAKM TLMALHHILI HKKRKKKGRK KEKGVIPCEF SNKHPLNNVE 60 NIMLQDSDGK EWPVRCIRRL GKAAWLSKGW RNFAQEKKLV CGDVCCFELI QGNEPFFKIS 120 VFPAEKKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	35	KKRKK
2	31	39	KKRKKKGRK
3	33	41	RKKKGRKKE