PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7618_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 237aa MW: 27587.1 Da PI: 10.0152

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7618_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.6	7.1e-11	54	116	32	98
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 s ++++++ g+sW + + +k +++ +l +GW++F + + + g ++F ++g+s+f v++f+ cra_locus_7618_iso_3_len_1388_ver_3 54 LSDLIKITTPVGESWHIGV--EKVGETLLLHDGWQKFMEHHSVGRGYYLIFNYEGNSKF--DVHIFD 116 56689999*********..********************************9999..999987 PP
2	B3	59	8.3e-19	140	231	4	97
E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 4 vltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 v+++ ++l++ + +p +f ++h +++ e ++l+d++g++W v++ +r+ +++ +l+kGW++F+++++L cra_locus_7618_iso_3_len_1388_ver_3 140 VTMRRYNLRKsFVVGIPCEFSNKHPLNNVE--NIMLQDSDGKEWPVRC-IRRLGKAAWLSKGWRNFAQEKKLVC 210 455566665525568*******888777..5***********.57777789************* PP T-EEEEEE-SS.SEE..EEEEE CS B3 77 gDfvvFkldgr.sefelvvkvf 97 gD++ F+l++ + f ++++vf cra_locus_7618_iso_3_len_1388_ver_3 211 GDVCCFELIQGnEPF-FKISVF 231 *****99753555.566555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	0.29	18	118	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.405	29	118	IPR003340	B3 DNA binding domain
CDD	cd10017	2.97E-7	50	116	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.2E-12	52	119	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.28E-13	52	118	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.5E-7	54	116	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.4E-24	132	231	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.8E-23	132	232	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.28E-19	136	232	No hit	No description
SMART	SM01019	5.5E-14	138	234	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.507	138	234	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-16	140	229	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MNWERKHQKK KPIACGAAKM TLMALHHILI HKKRKKKGRK KEKGRMPDEF DGELSDLIKI 60 TTPVGESWHI GVEKVGETLL LHDGWQKFME HHSVGRGYYL IFNYEGNSKF DVHIFDLTCV 120 QIQYPVTINA RKPENPSFTV TMRRYNLRKS FVVGIPCEFS NKHPLNNVEN IMLQDSDGKE 180 WPVRCIRRLG KAAWLSKGWR NFAQEKKLVC GDVCCFELIQ GNEPFFKISV FPAEKKE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	2e-13	127	231	35	140	B3 domain-containing transcription factor VRN1
4i1k_B	2e-13	127	231	35	140	B3 domain-containing transcription factor VRN1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	35	KKRKK
2	31	39	KKRKKKGRK
3	33	41	RKKKGRKKE

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3779	22	44