PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7618_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 141aa    MW: 16627.1 Da    PI: 7.7335
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7618_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.81.6e-121697798
                                         .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                                   B3  7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82
                                          ++vl ++ l++p +f  e       s  ++++++ g+sW + +  +k +++ +l +GW++F + + +  g  ++F
  cra_locus_7618_iso_5_len_2001_ver_3 16 DNYVLCHHKLRMPDEFDGE------LSDLIKITTPVGESWHIGV--EKVGETLLLHDGWQKFMEHHSVGRGYYLIF 83
                                         6789999999999999633......45579**************..****************************** PP

                                         EE-SSSEE..EEEEE- CS
                                   B3 83 kldgrsefelvvkvfr 98
                                          ++g+s+f   v++f+
  cra_locus_7618_iso_5_len_2001_ver_3 84 NYEGNSKF--DVHIFD 97
                                         ****9999..999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-141099IPR015300DNA-binding pseudobarrel domain
CDDcd100175.86E-101097No hitNo description
Gene3DG3DSA:2.40.330.106.5E-1410100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.1241099IPR003340B3 DNA binding domain
PfamPF023628.1E-91697IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MKPSTAWPES FFRIIDNYVL CHHKLRMPDE FDGELSDLIK ITTPVGESWH IGVEKVGETL  60
LLHDGWQKFM EHHSVGRGYY LIFNYEGNSK FDVHIFDLTC VQIQYPVTIN ARKPENPSFT  120
VTMRRYNLRK SFVVVRLWAL H
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100107563e-22(Linum usitatissimum)