PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7618_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 89aa    MW: 10365.8 Da    PI: 5.0261
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7618_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.67.8e-1214763298
                                         --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                   B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                                          s  ++++++ g+sW + +  +k +++ +l +GW++F + + +  g  ++F ++g+s+f   v++f+
  cra_locus_7618_iso_6_len_1672_ver_3 14 LSDLIKITTPVGESWHIGV--EKVGETLLLHDGWQKFMEHHSVGRGYYLIFNYEGNSKF--DVHIFD 76
                                         56679999***********..**********************************9999..999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.561178IPR003340B3 DNA binding domain
CDDcd100171.85E-81076No hitNo description
Gene3DG3DSA:2.40.330.101.0E-131179IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-141178IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-81476IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MHLQRMPDEF DGELSDLIKI TTPVGESWHI GVEKVGETLL LHDGWQKFME HHSVGRGYYL  60
IFNYEGNSKF DVHIFDLTCV QIQYPVTIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028052910.11e-24B3 domain-containing transcription factor VRN1-like
RefseqXP_028052911.11e-24B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2R6RH896e-23A0A2R6RH89_ACTCH; B3 domain-containing transcription factor
STRINGXP_009613233.12e-21(Nicotiana tomentosiformis)