PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7618_iso_8
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 218aa    MW: 25403.2 Da    PI: 7.8109
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7618_iso_8genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.34.8e-121697798
                                         .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                                   B3  7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82
                                          ++vl ++ l++p +f  e       s  ++++++ g+sW + +  +k +++ +l +GW++F + + +  g  ++F
  cra_locus_7618_iso_8_len_1837_ver_3 16 DNYVLCHHKLRMPDEFDGE------LSDLIKITTPVGESWHIGV--EKVGETLLLHDGWQKFMEHHSVGRGYYLIF 83
                                         6789999999999999633......45579**************..****************************** PP

                                         EE-SSSEE..EEEEE- CS
                                   B3 83 kldgrsefelvvkvfr 98
                                          ++g+s+f   v++f+
  cra_locus_7618_iso_8_len_1837_ver_3 84 NYEGNSKF--DVHIFD 97
                                         ****9999..999987 PP
2B359.36.9e-19121212497
                                          E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                                   B3   4 vltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                          v+++ ++l++   + +p +f ++h +++ e   ++l+d++g++W v++ +r+ +++ +l+kGW++F+++++L  
  cra_locus_7618_iso_8_len_1837_ver_3 121 VTMRRYNLRKsFVVGIPCEFSNKHPLNNVE--NIMLQDSDGKEWPVRC-IRRLGKAAWLSKGWRNFAQEKKLVC 191
                                          455566665525568*********888777..5***************.57777789***************** PP

                                          T-EEEEEE-SS.SEE..EEEEE CS
                                   B3  77 gDfvvFkldgr.sefelvvkvf 97 
                                          gD++ F+l++  + f ++++vf
  cra_locus_7618_iso_8_len_1837_ver_3 192 GDVCCFELIQGnEPF-FKISVF 212
                                          *******99753555.566555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-1310100IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-91097No hitNo description
PROSITE profilePS5086311.1241099IPR003340B3 DNA binding domain
SMARTSM010190.0141199IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-141199IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-81697IPR003340B3 DNA binding domain
SuperFamilySSF1019361.47E-23113213IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-24113212IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-19117213No hitNo description
SMARTSM010195.5E-14119215IPR003340B3 DNA binding domain
PROSITE profilePS5086313.507119215IPR003340B3 DNA binding domain
PfamPF023621.4E-16121210IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MKPSTAWPES FFRIIDNYVL CHHKLRMPDE FDGELSDLIK ITTPVGESWH IGVEKVGETL  60
LLHDGWQKFM EHHSVGRGYY LIFNYEGNSK FDVHIFDLTC VQIQYPVTIN ARKPENPSFT  120
VTMRRYNLRK SFVVGIPCEF SNKHPLNNVE NIMLQDSDGK EWPVRCIRRL GKAAWLSKGW  180
RNFAQEKKLV CGDVCCFELI QGNEPFFKIS VFPAEKKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1310821235140B3 domain-containing transcription factor VRN1
4i1k_B2e-1310821235140B3 domain-containing transcription factor VRN1