PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7627_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HB-PHD
Protein Properties Length: 545aa    MW: 62633.1 Da    PI: 8.7816
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7627_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox344.9e-114905331053
                                          HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                             Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                          + +e L  +F +n  ps++ r  L+k+lgL+ ++V  WF+N R+
  cra_locus_7627_iso_2_len_2064_ver_3 490 NVVEKLRHVFSENELPSRDIRDNLSKELGLESEKVNKWFKNARY 533
                                          67899*************************************97 PP
2PHD36.41.2e-12223276250
                                          BTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                                  PHD   2 CkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                                          C+ C+   +  +++++lCd +C+ +fH++C++++l++e++p g   w+C+ Ck+
  cra_locus_7627_iso_2_len_2064_ver_3 223 CAKCKLreAFPDNDIILCDgTCNCAFHQNCIEPPLSTENIPPGdeGWFCRYCKS 276
                                          88888854455********56********************9999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.77E-14214279IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.7E-11218278IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.211220277IPR019787Zinc finger, PHD-finger
SMARTSM002492.2E-8222275IPR001965Zinc finger, PHD-type
CDDcd155041.23E-29222274No hitNo description
PfamPF006286.8E-10223276IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590223274IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF466895.56E-10467533IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-13477532IPR009057Homeodomain-like
PROSITE profilePS5007112.649478538IPR001356Homeobox domain
CDDcd000863.71E-8479533No hitNo description
SMARTSM003893.6E-9480542IPR001356Homeobox domain
PfamPF000462.2E-8490533IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MSGDKRRQKH KEVRGRLNDK NVSRKAHNKR RKLKPKSQET SLGPKLLRKR GVDRVVEGKG  60
NSIRRRTIVK KAILQKTKSL KKQTLPSSRK DVPAVINSKD DVNRDSGEVG SHNSKRRRKR  120
KRKKDNLELD EASRLQRRTR YLLIKVKLEQ NLIDAYSGEG WKGQSREKIR PEKELERAKK  180
QILKCKLGIR EAIRQLDLLG SEGRIDDSAV APDGSVYHEH IVCAKCKLRE AFPDNDIILC  240
DGTCNCAFHQ NCIEPPLSTE NIPPGDEGWF CRYCKSKMEI LDATNAHLGT NFPMDSNWQD  300
IFKEEAVLPD GRESLLCQEQ QWPSDDSEDD DYDPEKGESS CKNSMDGSES DASANEHSLS  360
SLSSLEDDAF FFLERPEMIQ EEDQDNSAGA ESGGADCEVL NGSRQRKCVD YIKLNDELFG  420
KNAPINEQIS EDEDWGPTKR RRRAKESDEM NDVMTFGENG STYAEENNTE WEMKRLSGKR  480
KRPIFRFPLN VVEKLRHVFS ENELPSRDIR DNLSKELGLE SEKVNKWFKN ARYLALKARK  540
RDTRX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRRKRKRKK
2116121RRKRKR
3116122RRKRKRK
4117122RKRKRK
5117123RKRKRKK
6117124RKRKRKKD
7119123RKRKK
8119124RKRKKD
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027072537.10.0pathogenesis-related homeodomain protein-like
SwissprotP487851e-140PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A068V4T80.0A0A068V4T8_COFCA; Uncharacterized protein
STRINGVIT_11s0103g00650.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106842123
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]