PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_763_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 204aa MW: 21794.5 Da PI: 10.647

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_763_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	17	39	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H cra_locus_763_iso_3_len_762_ver_3 17 FSCNYCQRKFYSSQALGGHQNAH 39 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.29E-6	15	44	No hit	No description
PROSITE profile	PS50157	11.427	17	44	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	19	39	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
HVVHHVLEDD QQPARVFSCN YCQRKFYSSQ ALGGHQNAHK RERTIAKRGQ RIGANNNATA 60 TSSSFGPFSS TMASLPLHGT FNRSLGIQAH SMIHKPSSNC FNNVGLLPTM FGHHHGGGGG 120 GAWSRKPLDQ QPAIGRLAPE NYHMGSSLLG TSSSGGGGGG AKAARFDSFT KFSSPAVVAM 180 ADGFKPPLRT NQDELKKLDL TLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002272545.1	9e-62	PREDICTED: zinc finger protein 1
TrEMBL	A5BQW1	1e-60	A5BQW1_VITVI; Uncharacterized protein
STRING	VIT_09s0002g09080.t01	3e-61	(Vitis vinifera)