PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7653_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 209aa MW: 23204.8 Da PI: 4.8638

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7653_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.6	2.9e-05	101	142	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+R ++++ Lr ++P a ++ ++ +++L +Av+Y+ksL cra_locus_7653_iso_1_len_1226_ver_3 101 ERKRL-KMRKMVRALRGIVPGA---NQMNMNTVAVLDEAVRYLKSL 142 55554.68889999******...9999*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.518	91	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.08E-4	101	145	No hit	No description
SuperFamily	SSF47459	7.2E-8	101	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-7	102	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MTVGTIAYYQ XDASLSDNEQ REVTSSLKED SDDIDALLSF DEEEQDESDE EVSTARTDVN 60 RGNNSPDSCH NYESTPPRKK RVTSLKRNSG GNVNDSGCNN ERKRLKMRKM VRALRGIVPG 120 ANQMNMNTVA VLDEAVRYLK SLKVEMQKLG GGEIKEVYLE RLLLLLPLHL LLDSVNVHTG 180 KWSTGTPAAP SLCGFSSSSL VNEVELYVM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	107	RKRLKMR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087451.1	5e-46	transcription factor bHLH144-like
Refseq	XP_027087452.1	5e-46	transcription factor bHLH144-like
TrEMBL	A0A068VHI3	1e-44	A0A068VHI3_COFCA; Uncharacterized protein
STRING	cassava4.1_015098m	8e-38	(Manihot esculenta)