PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_76899_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 114aa    MW: 13804.2 Da    PI: 7.5176
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_76899_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.11.1e-213891356
                                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                         k++++t+eq++ Le+ Fe ++++  e+++eLAkklgL+ rqV vWFqNrRa++k
  cra_locus_76899_iso_1_len_340_ver_3 38 KKRRLTPEQVHLLEKSFETENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWK 91
                                         5679*************************************************9 PP
2HD-ZIP_I/II126.89.7e-4137112176
                          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 
                                          ekkrrl+ eqv+lLE+sFe+e+kLeperK+ela++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l 
  cra_locus_76899_iso_1_len_340_ver_3  37 EKKRRLTPEQVHLLEKSFETENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDQLKSSYDSLL 110
                                          69**********************************************************************98 PP

                          HD-ZIP_I/II  75 ee 76 
                                          ++
  cra_locus_76899_iso_1_len_340_ver_3 111 SN 112
                                          76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007118.1553393IPR001356Homeobox domain
SMARTSM003898.4E-213697IPR001356Homeobox domain
SuperFamilySSF466896.42E-2138104IPR009057Homeodomain-like
CDDcd000866.61E-163894No hitNo description
PfamPF000468.0E-193891IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-2339100IPR009057Homeodomain-like
PRINTSPR000314.0E-76473IPR000047Helix-turn-helix motif
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PRINTSPR000314.0E-77389IPR000047Helix-turn-helix motif
PfamPF021832.7E-893114IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
XGARSVISME ENSKRRPFFS SPEELFDEEY YDEQLPEKKR RLTPEQVHLL EKSFETENKL  60
EPERKTELAK KLGLQPRQVA VWFQNRRARW KTKQLERDYD QLKSSYDSLL SNYD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18593RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022873428.15e-70homeobox-leucine zipper protein HAT5-like
SwissprotQ022832e-60HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A061EJ867e-68A0A061EJ86_THECC; Homeobox-leucine zipper protein HAT5
STRINGevm.model.supercontig_215.36e-69(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]