PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_77643_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20152.5 Da    PI: 8.2365
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_77643_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.11.7e-112302149
                                         HHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                               SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyey 49
                                         +KKA+EL +LC++e+a+i+fs+  k++ +
  cra_locus_77643_iso_1_len_545_ver_3  2 FKKAYELTTLCGVEIAIIVFSPGKKVFSF 30
                                         9*********************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.629134IPR002100Transcription factor, MADS-box
SMARTSM004320.0027233IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-14247IPR002100Transcription factor, MADS-box
PfamPF003193.3E-12230IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
XFKKAYELTT LCGVEIAIIV FSPGKKVFSF GHPNVVPIID RFQNPNSSPS PGARSSQIVE  60
AHRNASVREL NIQLEELQEQ LDDQKKRGED LGKMRKASQG RCWWEAPVTQ LGLQEVEQLK  120
EAMEELKKNT AKFAEKIILE ASHSNPFLGA SSSRGAVGPN TINIDSKIPG LGLSMTAHGY  180
TLX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027101427.14e-76agamous-like MADS-box protein AGL62
TrEMBLA0A068TPM55e-67A0A068TPM5_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000131366e-57(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223