PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7801_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 768aa    MW: 86572.1 Da    PI: 8.7929
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7801_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05662684323
                                          ET..TTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                                          Cp   Cgk F ++ +L++H r+H
  cra_locus_7801_iso_1_len_2510_ver_3 662 CPvkGCGKDFISHKYLVQHRRVH 684
                                          9999*****************99 PP
2zf-C2H213.30.00025720746123
                                          EEET..TTTEEESSHHHHHHHHHH..T CS
                              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                                          y+C+   Cg++F+  s++ rH r+  H
  cra_locus_7801_iso_1_len_2510_ver_3 720 YVCTeaGCGQTFRFVSDFSRHKRKtgH 746
                                          99********************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035524637659IPR015880Zinc finger, C2H2-like
SMARTSM003550.0096660684IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.3660689IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-6661683IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280662684IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-9676718No hitNo description
Gene3DG3DSA:3.30.160.601.1E-9684712IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0014690714IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741690719IPR007087Zinc finger, C2H2
PROSITE patternPS000280692714IPR007087Zinc finger, C2H2
SuperFamilySSF576674.5E-8708743No hitNo description
Gene3DG3DSA:3.30.160.601.8E-9713743IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.676720751IPR007087Zinc finger, C2H2
SMARTSM003550.19720746IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280722746IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
XPKSVSRQGQ MHKRNPDGLF DVLVQSAEQI QLTDDESAEV VSKEDTRKEH SSLGLLALAY  60
GNSSDSEEDE AEADVHPGSW ETKNSDCLSC SVLVGDAAGS AGPEAASYFD FSNSAMDCAN  120
EIPLQSARPS MEQEPTRNRS EGRSQQSLDW PALPEENSFS YIESDSFGHQ LKLQHGSSSC  180
MPLAQKAETK MTNGLLPFDN RTLPFSARSD EESSRMHVFC LQHAVQVEKQ LRSIGGARVL  240
LLCHPDYPEL EAQARKLAEE LGNDHIWSDV SFREASGEDE EMIRLALESE EAIHGNGDWA  300
VKLGINLYYS ANLSRSPLYS KQMPYNFIIY NAFGRSPTMA EFNGKGPIKL KKTVVAGKWC  360
GKVWMSNQVH PFLAERDHGE EKTRSSSHVK VTLKPERPSE NIQTIETASR ISISCRKRKS  420
RTEIRPGTKE NSLKAEEQEK ASEDMSMECF LRQCKSNLRN KRMKKEKPEP LIKSARNKNE  480
LKIEIEDERK PRNKGVKNKK DFNMEIEDEP VPRPKCGKNK KELNIENEGE QKPSNKGVRS  540
KRELKEDEDD DPKPPRTRCA REKKQINLDT IDDPDGGPST RLRKRPSKPG KGQVARSVEA  600
KPTLKKQQNS VQQNNGKPKK GIVGSKNSRT REEKADFPCD LEGCTMSFGS KQELSLHKRN  660
ICPVKGCGKD FISHKYLVQH RRVHLDDRPL KCPWKGCKMT FKWAWARTEH IRVHTGARPY  720
VCTEAGCGQT FRFVSDFSRH KRKTGHTSKK GRGXLVIVID GVVFNIAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-6663575021136Lysine-specific demethylase REF6
6a58_A1e-6663575021136Lysine-specific demethylase REF6
6a59_A1e-6663575021136Lysine-specific demethylase REF6
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022882747.10.0lysine-specific demethylase REF6-like isoform X3
TrEMBLA0A1U8FXA80.0A0A1U8FXA8_CAPAN; Lysine-specific demethylase REF6
TrEMBLA0A2G2ZW030.0A0A2G2ZW03_CAPAN; lysine-specific demethylase REF6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49882331