PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7867_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 349aa    MW: 38926 Da    PI: 10.243
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7867_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.9e-32283340359
                                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                          D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  cra_locus_7867_iso_2_len_2501_ver_3 283 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 340
                                          9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.4E-18234279IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.3E-34269341IPR003657WRKY domain
PROSITE profilePS5081130.458276342IPR003657WRKY domain
SuperFamilySSF1182901.44E-27279341IPR003657WRKY domain
SMARTSM007741.3E-39281341IPR003657WRKY domain
PfamPF031069.9E-28283340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEEVEEANRA AVESCHRLLS LVSQPQDQNQ HRNLAVETGD AVRKFKKVVS LLSSTLGHAR  60
IRKVKKIQTP FPQKLLLENP ICRSDDQPKG LQLLQINSLE NPIQDSGSNL RSALTLGNSS  120
LELSSHGKNV LQLGQQTPPQ PNNHFLQQQL QLQQQQRYQI QQQQLKQQAE MMYRRSNSGI  180
SLNFDSSTCT PTMSSTRSFI SSLSIDGSVA NLGGNAFHLI GGSQSADQSS FQHKRRCSGR  240
GEDGSVKCGS SGRCHCSKKR KHRVKRSIKV PAISNKLADI PPDEYSWRKY GQKPIKGSPH  300
PRGYYKCSSM RGCPARKHVE RCLEDPSMLI VTYEGEHNHP RLPTQAANA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-212773431075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027164350.10.0probable WRKY transcription factor 21
SwissprotO043361e-126WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A068U8040.0A0A068U804_COFCA; Uncharacterized protein
STRINGXP_009618397.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350