PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7904_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HB-other

Protein Properties

Length: 609aa MW: 64150.8 Da PI: 7.3719

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7904_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.2	3.6e-05	87	103	39	55
S-HHHHHHHHHHHHHHH CS Homeobox 39 LterqVkvWFqNrRake 55 ++ +qV +WFqNrR+ cra_locus_7904_iso_1_len_1826_ver_3 87 VQMKQVWNWFQNRRYAL 103 6789**********965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.49E-8	41	107	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.5E-5	42	110	IPR009057	Homeodomain-like
CDD	cd00086	0.00574	42	104	No hit	No description
Pfam	PF16719	5.3E-42	171	298	IPR032001	SAWADEE domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0003682	Molecular Function	chromatin binding

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
XAGGSPFEFP REIKFNXNGT KKKKQKQLIM GRPPSNGGPS FRFNPTEVAE MESILLAHNC 60 LVPQREILVG LAEKFSNSPD RSGKPPVQMK QVWNWFQNRR YALRAKSTKS PAKLNVSPMP 120 QHDLAAARNV PQAPQHPSIP TANARNVPQV PQPVPTPTVE SAGKNGSDTS QMEFEAKSAR 180 DGAWYDVASF LSHRSLETND PEVLVRFSGF GAEEDEWVNV RKHVRQRSLP CESSECVAVL 240 PGDLILCFQE GKEQALYFDA HVLDAQKRRH DVRGCRCRFL VRYDHDQSEE IVPLRKVCRR 300 PETDYRMQLL HAESTNVNQN KTASEPNYGN SLKAYPPAEA TLKQPKVEGP DEIMPKPGNT 360 EVQTNSGPLP APISHATSTA PTSHSSEPFA SAAVPSPQSI VSAAPTTAFD ANSGVPGATV 420 VAPVASSVPV ASMGVTIANS SVHGATSVIT VTPITAPIAN SSIHGATIVA TVASSVFLAP 480 TVAPIVNSSL PGATNLARIT SSVPPAVASV ADSTVPTAQT MAPAANSSDP ISPAAATVAN 540 SSVPMASTAK APISDSGIPV AMTAEAPFVS NSSVPIASTA EAPIADSNVP ITMTAEAPGV 600 ANSSVPIAS

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

XAGGSPFEFP REIKFNXNGT KKKKQKQLIM GRPPSNGGPS FRFNPTEVAE MESILLAHNC  60
LVPQREILVG LAEKFSNSPD RSGKPPVQMK QVWNWFQNRR YALRAKSTKS PAKLNVSPMP  120
QHDLAAARNV PQAPQHPSIP TANARNVPQV PQPVPTPTVE SAGKNGSDTS QMEFEAKSAR  180
DGAWYDVASF LSHRSLETND PEVLVRFSGF GAEEDEWVNV RKHVRQRSLP CESSECVAVL  240
PGDLILCFQE GKEQALYFDA HVLDAQKRRH DVRGCRCRFL VRYDHDQSEE IVPLRKVCRR  300
PETDYRMQLL HAESTNVNQN KTASEPNYGN SLKAYPPAEA TLKQPKVEGP DEIMPKPGNT  360
EVQTNSGPLP APISHATSTA PTSHSSEPFA SAAVPSPQSI VSAAPTTAFD ANSGVPGATV  420
VAPVASSVPV ASMGVTIANS SVHGATSVIT VTPITAPIAN SSIHGATIVA TVASSVFLAP  480
TVAPIVNSSL PGATNLARIT SSVPPAVASV ADSTVPTAQT MAPAANSSDP ISPAAATVAN  540
SSVPMASTAK APISDSGIPV AMTAEAPFVS NSSVPIASTA EAPIADSNVP ITMTAEAPGV  600
ANSSVPIAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4iuq_A	1e-48	169	302	1	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B	1e-48	169	302	1	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A	1e-48	169	302	1	134	SHH1 SAWADEE
4iur_B	1e-48	169	302	1	134	SHH1 SAWADEE
4iut_A	1e-48	169	302	1	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B	1e-48	169	302	1	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A	1e-48	169	302	1	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B	1e-48	169	302	1	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A	1e-48	169	302	1	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B	1e-48	169	302	1	134	SAWADEE HOMEODOMAIN HOMOLOG 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027172953.1	0.0	uncharacterized protein LOC113772532 isoform X2
TrEMBL	A0A068UEA6	0.0	A0A068UEA6_COFCA; Uncharacterized protein
STRING	Solyc10g007130.2.1	1e-167	(Solanum lycopersicum)