PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7904_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HB-other
Protein Properties Length: 734aa    MW: 76362.3 Da    PI: 5.269
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7904_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.94.5e-05871033955
                                          S-HHHHHHHHHHHHHHH CS
                             Homeobox  39 LterqVkvWFqNrRake 55 
                                          ++ +qV +WFqNrR+  
  cra_locus_7904_iso_3_len_2201_ver_3  87 VQMKQVWNWFQNRRYAL 103
                                          6789**********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.93E-841107IPR009057Homeodomain-like
CDDcd000860.0071842104No hitNo description
Gene3DG3DSA:1.10.10.607.1E-542110IPR009057Homeodomain-like
PfamPF167197.1E-42171298IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
XAGGSPFEFP REIKFNXNGT KKKKQKQLIM GRPPSNGGPS FRFNPTEVAE MESILLAHNC  60
LVPQREILVG LAEKFSNSPD RSGKPPVQMK QVWNWFQNRR YALRAKSTKS PAKLNVSPMP  120
QHDLAAARNV PQAPQHPSIP TANARNVPQV PQPVPTPTVE SAGKNGSDTS QMEFEAKSAR  180
DGAWYDVASF LSHRSLETND PEVLVRFSGF GAEEDEWVNV RKHVRQRSLP CESSECVAVL  240
PGDLILCFQE GKEQALYFDA HVLDAQKRRH DVRGCRCRFL VRYDHDQSEE IVPLRKVCRR  300
PETDYRMQLL HAESTNVNQN KTASEPNYGN SLKAYPPAEA TLKQPKVEGP DEIMPKPGNT  360
EVQTNSGPLP APISHATSTA PTSHSSEPFA SAAVPSPQSI VSAAPTTAFD ANSGVPGATV  420
VAPVASSVPV ASMGVTIANS SVHGATSVIT VTPITAPIAN SSIHGATIVA TVASSVFLAP  480
TVAPIVNSSL PGATNLARIT SSVPPAVASV ADSTVPTAQT MAPAANSSDP ISPAAATVAN  540
SSVPMASTAK APISDSGIPV AMTAEAPFVS NSSVPIASTA KPPIVDSNVP LAVTVEAPVA  600
DSSVPIASTA EASILDSNIP VAMSAEAPVI ADSSVPTTST AEAPIADSNI PVAMTAEVPV  660
ANSSVPVAST VEAPNADSND VPVAMTVEAP IADNSGVPIA STGAAPVVDS NVLDATTDEA  720
PVATNSGLPE ATTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A4e-481693021134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-481693021134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-481693021134SHH1 SAWADEE
4iur_B4e-481693021134SHH1 SAWADEE
4iut_A4e-481693021134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-481693021134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-481693021134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-481693021134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A4e-481693021134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-481693021134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027172953.10.0uncharacterized protein LOC113772532 isoform X2
TrEMBLA0A068UEA60.0A0A068UEA6_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124