PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7910_iso_8
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 226aa    MW: 25116.5 Da    PI: 8.7499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7910_iso_8genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.5e-1075119554
                                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                          h+++Er RR+ri +++  L+el+P++      K + a++L +  +Y+k L
  cra_locus_7910_iso_8_len_1321_ver_3  75 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 119
                                          99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.40E-1068124No hitNo description
SuperFamilySSF474595.37E-1668129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.32370119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1672130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-775119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1176125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
XWWGWGVGWG SKLLPRAYRG NNIKKLLMLD NPKCCXILWQ AFQGQPTPST AVTLPHPPAI  60
RPRVRARRGQ ATDPHSIAER LRRERISERI KALQELVPSC NKTDRAAMLD EILDYVKFLR  120
LQVKVLSMSR LGGAGAVAQL VADIPLQSVE GDNGESRSNQ HVWEKWSNEE TEQEVAKLMG  180
EDVGAAMQYL QSKSLCIMPI SLAALICPSP HTDDPTIVKP EPAAPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027116404.11e-117transcription factor UNE12-like
RefseqXP_027165042.11e-117transcription factor UNE12-like
SwissprotO227683e-73UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A068VJD01e-116A0A068VJD0_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000348401e-113(Solanum tuberosum)
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]