PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_79238_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GRAS

Protein Properties

Length: 106aa MW: 12363.8 Da PI: 5.1901

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_79238_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	100.4	2.7e-31	2	100	247	345
GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320 ++n+++F +rf+e+l+yy+a+f+s++a r+++ ri+ E++++++++vn++aceg er+erhe ++kWr rl+ cra_locus_79238_iso_1_len_316_ver_3 2 NTNTGTFYQRFCETLDYYTAMFESIDAARERDDRLRISSEEHCVAKDVVNIIACEGIERVERHELFGKWRLRLM 75 78************************9***************************************** PP GRAS 321 eaGFkpvplsekaakqaklllrkvk 345 +aGF+pv+ls ++ + +k +l++++ cra_locus_79238_iso_1_len_316_ver_3 76 MAGFSPVQLSPSVSNVVKEVLKEFS 100 *******************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.335	1	106	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.4E-29	2	100	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
SNTNTGTFYQ RFCETLDYYT AMFESIDAAR ERDDRLRISS EEHCVAKDVV NIIACEGIER 60 VERHELFGKW RLRLMMAGFS PVQLSPSVSN VVKEVLKEFS PNFWMX

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269\|PubMed:16680434}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269\|PubMed:16680434}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095941.1	3e-56	scarecrow-like protein 13
Swissprot	Q9M0M5	5e-41	SCL13_ARATH; Scarecrow-like protein 13
TrEMBL	A0A022QK74	5e-52	A0A022QK74_ERYGU; Uncharacterized protein
STRING	Migut.M01421.1.p	8e-53	(Erythranthe guttata)