PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_79463_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 154aa    MW: 17367.3 Da    PI: 4.8783
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_79463_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.68.9e-25450551
                                         SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                         +k+ rqvtfskRrng+lKKA+ELSvLCd+eva +if  +gkly+y+s
  cra_locus_79463_iso_1_len_461_ver_3  4 DKIARQVTFSKRRNGLLKKANELSVLCDVEVAAMIFCDRGKLYDYCS 50
                                         7899*****************************************96 PP
2K-box393.3e-14771521287
                                K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                                          ++++  + +++      e Lq   R l    +++Ls+++Lq+Le+q+ ++l + Rs+K+ lll++++ l++kek
  cra_locus_79463_iso_1_len_461_ver_3  77 QNQQDQCSKYEGFLTSGELLQIVERDLEEPFIDQLSVNDLQHLENQVVEALIQTRSTKTCLLLDSVSSLKEKEK 150
                                          4567777778888888899999999999999******************************************9 PP

                                K-box  86 el 87 
                                          + 
  cra_locus_79463_iso_1_len_461_ver_3 151 SS 152
                                          75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.352152IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-21151IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-24468IPR002100Transcription factor, MADS-box
PfamPF003198.5E-22448IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-151429IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-152950IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.46879154IPR002487Transcription factor, K-box
PfamPF014867.5E-991152IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
RPGDKIARQV TFSKRRNGLL KKANELSVLC DVEVAAMIFC DRGKLYDYCS SSSLPEMLRR  60
YHSSVEAEPS SSTGVLQNQQ DQCSKYEGFL TSGELLQIVE RDLEEPFIDQ LSVNDLQHLE  120
NQVVEALIQT RSTKTCLLLD SVSSLKEKEK SSEX
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:25183521, ECO:0000269|PubMed:7632923}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022885395.13e-61agamous-like MADS-box protein AGL27
SwissprotP293834e-34AGL3_ARATH; Agamous-like MADS-box protein AGL3
TrEMBLA0A1S3X7B12e-55A0A1S3X7B1_TOBAC; agamous-like MADS-box protein AGL27 isoform X1
TrEMBLA0A1U7XSL92e-55A0A1U7XSL9_NICSY; agamous-like MADS-box protein AGL27 isoform X1
STRINGXP_009795052.14e-56(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Publications ? help Back to Top
  1. Maejima K, et al.
    Degradation of class E MADS-domain transcription factors in Arabidopsis by a phytoplasmal effector, phyllogen.
    Plant Signal Behav, 2015. 10(8): p. e1042635
    [PMID:26179462]