PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7992_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 292aa MW: 31815.3 Da PI: 7.4998

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7992_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.9	1.4e-40	37	98	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss cra_locus_7992_iso_1_len_1423_ver_3 37 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 98 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	25	95	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-34	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.646	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MDPSSAQHHH QEMSSQTLES MLVCTKAQQD QKKPRPPEQA LKCPRCDSTN TKFCYYNNYS 60 LSQPRYFCKS CRRYWTKGGT LRNVPVGGGC RKNKRSSSSS SSSSSKRGQD QAVATNHINP 120 ILGGLSYDSD ISLAIARLQK QTNGQMGFDD NDHLPMLGNP NNPHCDVLGS APAPTGLFDA 180 LRGGFLEPPN GFHHSLFYNG MNNIGHVENG GGLGSMNVSD QEMGGLPYEE LGVSSATTVT 240 TTVKQEMCNS RSEGENRVLW GFPWQFNGEA NIGSDLGFGS SSWHGLLNSP LM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027108486.1	1e-134	dof zinc finger protein DOF2.1-like
Refseq	XP_027150703.1	1e-134	dof zinc finger protein DOF2.1-like
TrEMBL	A0A068UK67	1e-130	A0A068UK67_COFCA; Uncharacterized protein
STRING	XP_009622795.1	1e-111	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419