PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8025_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

YABBY

Protein Properties

Length: 200aa MW: 22446.5 Da PI: 8.725

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8025_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	225.4	1.5e-69	6	171	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkv 77 + sseq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+++s + ++++ + cra_locus_8025_iso_1_len_1051_ver_3 6 DVSSEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSSSSS-SSCSWQDVQGAANC 78 5789************************************************99998.44455556666666 PP YABBY 78 eeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishre 151 + + + ++e+ +s+s+ ++++ + +++ ++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishre cra_locus_8025_iso_1_len_1051_ver_3 79 NPPHHQYKMEMGSSSSRCNNKMAMRSSNIPKTTEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHRE 152 66666666666666665555556655555555666789******************************** PP YABBY 152 afsaaaknWahfPkihfgl 170 afs+aaknWahfP+ihfgl cra_locus_8025_iso_1_len_1051_ver_3 153 AFSTAAKNWAHFPHIHFGL 171 ***************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.3E-71	8	171	IPR006780	YABBY protein
SuperFamily	SSF47095	4.32E-8	113	164	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.5E-4	119	165	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MSSCIDVSSE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 SSSSSSCSWQ DVQGAANCNP PHHQYKMEMG SSSSRCNNKM AMRSSNIPKT TEERIVNRPP 120 EKRQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLETNNQPK 180 LGHDQGSEKH RMPRAAFLKK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002285328.1	1e-106	PREDICTED: axial regulator YABBY 5
Swissprot	Q8GW46	2e-81	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	D7TC40	1e-105	D7TC40_VITVI; Uncharacterized protein
STRING	VIT_11s0016g05590.t01	1e-106	(Vitis vinifera)

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]