PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8025_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

YABBY

Protein Properties

Length: 210aa MW: 23673.9 Da PI: 8.713

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8025_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	206	1.4e-63	6	181	4	170
YABBY 4 fssseqvCyvqCnfCntila...........vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldes 66 + sseq+Cy+ CnfCn +la vsvP +slf +vtvrCGhCt+l svn+a a q l+++s cra_locus_8025_iso_3_len_1081_ver_3 6 DVSSEQLCYIPCNFCNIVLAiwyfvggyvtqVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSSSSS--SC 77 5789***********997555555555558****************************999997..45 PP YABBY 67 lkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqri 140 ++++ + + + + ++e+ +s+s+ ++++ + +++ ++++ v+rPPekrqrvPsayn+fikeeiqri cra_locus_8025_iso_3_len_1081_ver_3 78 SWQDVQGAANCNPPHHQYKMEMGSSSSRCNNKMAMRSSNIPKTTEERIVNRPPEKRQRVPSAYNQFIKEEIQRI 151 5556666666666666666666555555555555655555555556789********************* PP YABBY 141 kasnPdishreafsaaaknWahfPkihfgl 170 ka+nPdishreafs+aaknWahfP+ihfgl cra_locus_8025_iso_3_len_1081_ver_3 152 KANNPDISHREAFSTAAKNWAHFPHIHFGL 181 **************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.0E-65	8	181	IPR006780	YABBY protein
SuperFamily	SSF47095	4.71E-8	124	174	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.7E-4	129	175	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSSCIDVSSE QLCYIPCNFC NIVLAIWYFV GGYVTQVSVP CSSLFDIVTV RCGHCTNLWS 60 VNMAAAFQSL SSSSSSCSWQ DVQGAANCNP PHHQYKMEMG SSSSRCNNKM AMRSSNIPKT 120 TEERIVNRPP EKRQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG 180 LMLETNNQPK LGHDQGSEKH RMPRAAFLKK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002285328.1	1e-103	PREDICTED: axial regulator YABBY 5
Swissprot	Q8GW46	1e-77	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	D7TC40	1e-101	D7TC40_VITVI; Uncharacterized protein
STRING	VIT_11s0016g05590.t01	1e-102	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]