PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8025_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

YABBY

Protein Properties

Length: 148aa MW: 16804.9 Da PI: 10.4768

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8025_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	138.3	9e-43	23	119	74	170
YABBY 74 elkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdi 147 + + + + ++e+ +s+s+ ++++ + +++ ++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdi cra_locus_8025_iso_6_len_1360_ver_3 23 AANCNPPHHQYKMEMGSSSSRCNNKMAMRSSNIPKTTEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDI 96 444444444444444444444444445544555555556779****************************** PP YABBY 148 shreafsaaaknWahfPkihfgl 170 shreafs+aaknWahfP+ihfgl cra_locus_8025_iso_6_len_1360_ver_3 97 SHREAFSTAAKNWAHFPHIHFGL 119 *******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.5E-41	19	119	IPR006780	YABBY protein
SuperFamily	SSF47095	2.36E-8	61	112	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	8.6E-5	67	113	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MAAAFQSLSS SSSSCSWQDV QGAANCNPPH HQYKMEMGSS SSRCNNKMAM RSSNIPKTTE 60 ERIVNRPPEK RQRVPSAYNQ FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM 120 LETNNQPKLG HDQGSEKHRM PRAAFLKK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001238347.1	2e-67	protein YABBY 15
Refseq	XP_006600135.1	2e-67	transcription factor YABBY15 isoform X1
Refseq	XP_028209579.1	2e-67	axial regulator YABBY 5-like isoform X1
Refseq	XP_028209580.1	2e-67	axial regulator YABBY 5-like isoform X2
Swissprot	Q8GW46	2e-45	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0R0FBR6	4e-66	A0A0R0FBR6_SOYBN; Uncharacterized protein
TrEMBL	A0A445G5F5	6e-66	A0A445G5F5_GLYSO; Axial regulator YABBY 5
TrEMBL	C6SYG8	6e-66	C6SYG8_SOYBN; Uncharacterized protein
STRING	GLYMA17G12200.1	9e-67	(Glycine max)

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]