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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | cra_locus_8055_iso_3 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 119aa MW: 13012.6 Da PI: 6.5057 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 36.6 | 8.2e-12 | 76 | 112 | 3 | 41 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKa 41
r+h+e+E+rRRdriN +++Lr+l+Pk+ ++ + +sK+
cra_locus_8055_iso_3_len_1530_ver_3 76 RSHSEAEKRRRDRINAQLATLRKLIPKS--EKVTNPSKS 112
78*************************6..488888886 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 3.27E-8 | 73 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 10.95 | 73 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.27E-8 | 76 | 112 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 4.1E-10 | 76 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 3.3E-9 | 76 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 119 aa Download sequence Send to blast |
MDTWFSSVLP EDAAAWTHCQ AATEEVDGAF VVPQLSNNPG ETCSSFNFGG FPPSFPSPWL 60 MPIEGFVDGR ATSASRSHSE AEKRRRDRIN AQLATLRKLI PKSEKVTNPS KSICSLIIS |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027104296.1 | 9e-34 | transcription factor bHLH51-like | ||||
| Refseq | XP_027110762.1 | 9e-34 | transcription factor bHLH51-like | ||||
| Refseq | XP_027162009.1 | 9e-34 | transcription factor bHLH51 | ||||
| TrEMBL | A0A068V0E3 | 2e-32 | A0A068V0E3_COFCA; Uncharacterized protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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