PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8145_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 161aa MW: 17718 Da PI: 8.6596

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8145_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.6	2.5e-33	56	113	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k ver++edp+++++tYeg+Hnhe cra_locus_8145_iso_2_len_678_ver_3 56 RDGFRWRKYGQKVVKGNPYPRSYYRCTSLKCNVRKYVERTSEDPTAFITTYEGKHNHE 113 7********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-34	41	115	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-29	48	115	IPR003657	WRKY domain
PROSITE profile	PS50811	33.534	50	115	IPR003657	WRKY domain
SMART	SM00774	5.0E-37	55	114	IPR003657	WRKY domain
Pfam	PF03106	5.0E-26	57	113	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009957	Biological Process	epidermal cell fate specification
GO:0010214	Biological Process	seed coat development
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
XGDFDDGSKG LEAESDEPKS KRRKNENQSS EVGTSGEGTQ EPLIVVQNTV DSEIIRDGFR 60 WRKYGQKVVK GNPYPRSYYR CTSLKCNVRK YVERTSEDPT AFITTYEGKH NHEMPIKSTH 120 SGGGARTSSK ADDMSXSSSS SSNSNAALVG AVERAMNMMG K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-33	46	115	8	77	Probable WRKY transcription factor 4
2lex_A	2e-33	46	115	8	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027175292.1	3e-66	WRKY transcription factor 44 isoform X1
Refseq	XP_027175293.1	3e-66	WRKY transcription factor 44 isoform X1
Refseq	XP_027175294.1	3e-66	WRKY transcription factor 44 isoform X2
Swissprot	Q9ZQ70	6e-38	WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBL	A0A068UE22	7e-65	A0A068UE22_COFCA; Uncharacterized protein
STRING	POPTR_0006s13550.1	7e-62	(Populus trichocarpa)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Aamir M, et al. Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach. Front Plant Sci, 2017. 8: p. 819 [PMID:28611792]