PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8145_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 491aa    MW: 54020.7 Da    PI: 9.1893
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8145_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.7e-33193249360
                                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                          DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  cra_locus_8145_iso_3_len_2017_ver_3 193 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHPK 249
                                          9***************************************.***************85 PP
2WRKY1031.7e-32386443259
                                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                          +Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k ver++edp+++++tYeg+Hnhe
  cra_locus_8145_iso_3_len_2017_ver_3 386 RDGFRWRKYGQKVVKGNPYPRSYYRCTSLKCNVRKYVERTSEDPTAFITTYEGKHNHE 443
                                          7********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-30179250IPR003657WRKY domain
SuperFamilySSF1182903.53E-26189250IPR003657WRKY domain
SMARTSM007741.3E-37191249IPR003657WRKY domain
PfamPF031067.3E-26193248IPR003657WRKY domain
PROSITE profilePS5081124.076193250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-33371445IPR003657WRKY domain
SuperFamilySSF1182902.48E-28378445IPR003657WRKY domain
PROSITE profilePS5081133.534380445IPR003657WRKY domain
SMARTSM007745.0E-37385444IPR003657WRKY domain
PfamPF031063.3E-25387443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEVKEADKIV IAKPVPSRPA GSNFKSFSEL LAGAINASPS NACYETPVTA IRPRTLRFKP  60
AANNALVGVV SSELSRNVVH CPSSETVLES EKTSNLVYKP MAKLVSKTTV SLLANLRSSE  120
LIQEQELAGA ELHVQKANLV KNRSDHRSEP CHSFLFECGI EKKVESSKTS SATLEEDQRS  180
LSHSTLGDRP SYDGYNWRKY GQKQVKGSEY PRSYYKCTHP NCPVKKKVER SLDGQIAEIV  240
YKGEHNHPKP QPFKRNSSDG HCRGNVGNES NNPLRSNQPS DRNAGQVGTS QNRNEFGYSS  300
YSSRVPSFID PVTTGTSNLG MTFFDISSGH SGDFDDGSKG LEAESDEPKS KRRKNENQSS  360
EVGTSGEGTQ EPLIVVQNTV DSEIIRDGFR WRKYGQKVVK GNPYPRSYYR CTSLKCNVRK  420
YVERTSEDPT AFITTYEGKH NHEMPIKSTH SGGGARTSSK ADDMSXSSSS SSNSNAALVG  480
AVERAMNMMG K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-30193445877Probable WRKY transcription factor 4
2lex_A3e-30193445877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175292.10.0WRKY transcription factor 44 isoform X1
RefseqXP_027175293.10.0WRKY transcription factor 44 isoform X1
TrEMBLA0A068UE220.0A0A068UE22_COFCA; Uncharacterized protein
STRINGVIT_08s0040g03070.t010.0(Vitis vinifera)