PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8145_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 536aa    MW: 59783.6 Da    PI: 8.6256
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8145_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.1e-33238294360
                                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                          DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  cra_locus_8145_iso_4_len_2153_ver_3 238 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHPK 294
                                          9***************************************.***************85 PP
2WRKY102.81.9e-32431488259
                                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                          +Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k ver++edp+++++tYeg+Hnhe
  cra_locus_8145_iso_4_len_2153_ver_3 431 RDGFRWRKYGQKVVKGNPYPRSYYRCTSLKCNVRKYVERTSEDPTAFITTYEGKHNHE 488
                                          7********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-30224295IPR003657WRKY domain
SuperFamilySSF1182904.05E-26234295IPR003657WRKY domain
SMARTSM007741.3E-37236294IPR003657WRKY domain
PROSITE profilePS5081124.076238295IPR003657WRKY domain
PfamPF031068.2E-26238293IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-33416490IPR003657WRKY domain
SuperFamilySSF1182902.88E-28423490IPR003657WRKY domain
PROSITE profilePS5081133.534425490IPR003657WRKY domain
SMARTSM007745.0E-37430489IPR003657WRKY domain
PfamPF031063.8E-25432488IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MEVKEADKIV IAKPVPSRPA GSNFKSFSEL LAGAINASPS NACYETPVTA IRPRTLRFKP  60
AANNALVGVV SSEVSLYKFA XQKNTTLGKL ISEQSKFLNV CHXETFFSIC FYSDKDIHSE  120
KEELVYLDNI SLINSFGFIL LSHIQEFIRX FFAEILLFRF QRSSELIQEQ ELAGAELHVQ  180
KANLVKNRSD HRSEPCHSFL FECGIEKKVE SSKTSSATLE EDQRSLSHST LGDRPSYDGY  240
NWRKYGQKQV KGSEYPRSYY KCTHPNCPVK KKVERSLDGQ IAEIVYKGEH NHPKPQPFKR  300
NSSDGHCRGN VGNESNNPLR SNQPSDRNAG QVGTSQNRNE FGYSSYSSRV PSFIDPVTTG  360
TSNLGMTFFD ISSGHSGDFD DGSKGLEAES DEPKSKRRKN ENQSSEVGTS GEGTQEPLIV  420
VQNTVDSEII RDGFRWRKYG QKVVKGNPYP RSYYRCTSLK CNVRKYVERT SEDPTAFITT  480
YEGKHNHEMP IKSTHSGGGA RTSSKADDMS XSSSSSSNSN AALVGAVERA MNMMGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-30238490877Probable WRKY transcription factor 4
2lex_A3e-30238490877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175292.10.0WRKY transcription factor 44 isoform X1
RefseqXP_027175293.10.0WRKY transcription factor 44 isoform X1
TrEMBLA0A068UE220.0A0A068UE22_COFCA; Uncharacterized protein
STRINGVIT_08s0040g03070.t011e-168(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99512227