PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8145_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 493aa    MW: 54235.9 Da    PI: 9.1893
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8145_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.7e-33195251360
                                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                          DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  cra_locus_8145_iso_5_len_2023_ver_3 195 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHPK 251
                                          9***************************************.***************85 PP
2WRKY1031.7e-32388445259
                                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                          +Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k ver++edp+++++tYeg+Hnhe
  cra_locus_8145_iso_5_len_2023_ver_3 388 RDGFRWRKYGQKVVKGNPYPRSYYRCTSLKCNVRKYVERTSEDPTAFITTYEGKHNHE 445
                                          7********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-30181252IPR003657WRKY domain
SuperFamilySSF1182903.66E-26191252IPR003657WRKY domain
SMARTSM007741.3E-37193251IPR003657WRKY domain
PROSITE profilePS5081124.076195252IPR003657WRKY domain
PfamPF031067.3E-26195250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-33373447IPR003657WRKY domain
SuperFamilySSF1182902.48E-28380447IPR003657WRKY domain
PROSITE profilePS5081133.534382447IPR003657WRKY domain
SMARTSM007745.0E-37387446IPR003657WRKY domain
PfamPF031063.3E-25389445IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEVKEADKIV IAKPVPSRPA GSNFKSFSEL LAGAINASPS NACYETPVTA IRPRTLRFKP  60
AANNALVGVV SSESQLSRNV VHCPSSETVL ESEKTSNLVY KPMAKLVSKT TVSLLANLRS  120
SELIQEQELA GAELHVQKAN LVKNRSDHRS EPCHSFLFEC GIEKKVESSK TSSATLEEDQ  180
RSLSHSTLGD RPSYDGYNWR KYGQKQVKGS EYPRSYYKCT HPNCPVKKKV ERSLDGQIAE  240
IVYKGEHNHP KPQPFKRNSS DGHCRGNVGN ESNNPLRSNQ PSDRNAGQVG TSQNRNEFGY  300
SSYSSRVPSF IDPVTTGTSN LGMTFFDISS GHSGDFDDGS KGLEAESDEP KSKRRKNENQ  360
SSEVGTSGEG TQEPLIVVQN TVDSEIIRDG FRWRKYGQKV VKGNPYPRSY YRCTSLKCNV  420
RKYVERTSED PTAFITTYEG KHNHEMPIKS THSGGGARTS SKADDMSXSS SSSSNSNAAL  480
VGAVERAMNM MGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-30195447877Probable WRKY transcription factor 4
2lex_A3e-30195447877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175292.10.0WRKY transcription factor 44 isoform X1
RefseqXP_027175293.10.0WRKY transcription factor 44 isoform X1
TrEMBLA0A068UE220.0A0A068UE22_COFCA; Uncharacterized protein
STRINGVIT_08s0040g03070.t010.0(Vitis vinifera)