PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8162_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 425aa    MW: 47251.1 Da    PI: 6.7526
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8162_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-1096118326
                                          S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                          ++lC+f+++ G C yG++CkF H+
  cra_locus_8162_iso_1_len_1622_ver_3  96 EKLCKFWLK-GSCDYGENCKFLHS 118
                                          579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.0421743IPR000571Zinc finger, CCCH-type
SMARTSM0035611742IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.2293120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-893118IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-695119IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-896118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-797118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.6E-12124194IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.4E-5124163IPR001680WD40 repeat
PfamPF004009.4E-6127163IPR001680WD40 repeat
SuperFamilySSF509782.38E-49128422IPR017986WD40-repeat-containing domain
CDDcd002002.85E-40130418No hitNo description
PROSITE profilePS5008213.984131172IPR001680WD40 repeat
PROSITE profilePS5029423.73131336IPR017986WD40-repeat-containing domain
PRINTSPR003207.2E-7150164IPR020472G-protein beta WD-40 repeat
Gene3DG3DSA:2.130.10.102.7E-40195422IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.89203242IPR001680WD40 repeat
SMARTSM003201.2E-5249287IPR001680WD40 repeat
PfamPF004000.0019256287IPR001680WD40 repeat
PROSITE profilePS5008213.783256296IPR001680WD40 repeat
PROSITE patternPS006780274288IPR019775WD40 repeat, conserved site
PRINTSPR003207.2E-7274288IPR020472G-protein beta WD-40 repeat
SMARTSM003203.7E-5290327IPR001680WD40 repeat
PfamPF004000.0021292327IPR001680WD40 repeat
PRINTSPR003207.2E-7314328IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780314328IPR019775WD40 repeat, conserved site
SMARTSM0032018334377IPR001680WD40 repeat
SMARTSM003202.6380418IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MGPVPAVASM SWRSGRNNQL KVCKHWRAGN CYRFPCPFLH AEELPKGSSN PPPRGGDHWR  60
NPNSNFRNSW TRQEQQKQKQ EGSSAATERG VVKKTEKLCK FWLKGSCDYG ENCKFLHSWK  120
KGDCFSYLSE LEGHEDVVTG IALPSGSDKL YTGSKDGTFR VWDCNSGQNA GVANLGSEIC  180
CMINEGPWIF VGLKGLVRVW NSQTNTDFSL EGAAGRVYSL AVCNNNNTLF AAVEDGSILG  240
WKFDESTGRF EEAAALKGHT RAVVTLAVGS NNRLYSGSMD NSIRIWNLEN MECLQIMKDH  300
TDVVMSVLCW DQFLLSCSLD GTIKVWNNST ESGSGNLEVI YTHNEEHGLL SLCGMQDQEN  360
KPILLCSSND NSVLVYDLPS FEERGKIFSK EVVRTLQSCP GSRIFFTGEG NGSVRVWKWE  420
DGVKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-181284228321Tako8
6g6n_A3e-181284228321Tako8
6g6n_B3e-181284228321Tako8
6g6n_C3e-181284228321Tako8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027110404.11e-174zinc finger CCCH domain-containing protein 48-like
RefseqXP_027161267.11e-174zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ21e-159C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A068U9W21e-174A0A068U9W2_COFCA; Uncharacterized protein
STRINGVIT_16s0100g00320.t011e-171(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134