PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8217_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family AP2
Protein Properties Length: 523aa    MW: 57118.3 Da    PI: 6.9044
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8217_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-14167226155
                                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  cra_locus_8217_iso_1_len_1874_ver_3 167 SIYRGVTRHRWTGRYEAHLWDnTCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 226
                                          57*******************665564477446**********99*************98 PP
2AP247.25.5e-15269320155
                                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  cra_locus_8217_iso_1_len_1874_ver_3 269 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 320
                                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-17167235IPR016177DNA-binding domain
PfamPF008471.0E-11167226IPR001471AP2/ERF domain
CDDcd000181.75E-20167235No hitNo description
SMARTSM003806.4E-28168240IPR001471AP2/ERF domain
PROSITE profilePS5103218.887168234IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-15168234IPR001471AP2/ERF domain
PRINTSPR003672.7E-6169180IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18269330IPR016177DNA-binding domain
PfamPF008476.8E-10269320IPR001471AP2/ERF domain
CDDcd000186.74E-25269330No hitNo description
SMARTSM003807.9E-34270334IPR001471AP2/ERF domain
PROSITE profilePS5103219.045270328IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-18270328IPR001471AP2/ERF domain
PRINTSPR003672.7E-6310330IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
XMDMNSSSSP QSHHPQNWLA FSLSNHHHFT SSSSDSSHLS SFFQPFHPNP PATTTTSEEN  60
GSGGCPKLED FLGGGNVTSS SAAGEGVTDM CHQMPAAGEP APSSTHVVNT DMYESELKTI  120
AASFLRGYNS TTDRTDTQKQ MTVPLSEPPP PPPAAKKAAE TFGQRTSIYR GVTRHRWTGR  180
YEAHLWDNTC RREGQSRKGR QVYLGGYDKE DKAARAYDLA ALKYWGPTTT TNFPVCNYEK  240
ELEEMKHMTR QEFVASLRRR SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT  300
FSTQEEAAEA YDIAAIKFRG LNAVTNFDIS RYDVKSIASS NLPIGGMNNK SKASSETLSG  360
NDNKSVDGIS NRSDDRDLSS VTSVSFVSQT STSTLSFGLP VKQDASDFWS SLGYTSSAFN  420
NGDVKNPIPG AVHVHPTTTT TYGVEYVTTS NNTCENNNVL LNGGNIGNDG SRGFFEEENN  480
NGDATGAVVP IGTRIGSYGN WMHSFQSEKQ NLSVFQTPIF GME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175794.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-151AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2C9UMZ00.0A0A2C9UMZ0_MANES; Uncharacterized protein
STRINGcassava4.1_004734m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22462457
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]