PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8255_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 201aa    MW: 22836.4 Da    PI: 10.3399
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8255_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-0983131348
                                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
                     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                         +W+  E  +lv++v+++G g+W+ I r        Rt  ++k++w+++l
  cra_locus_8255_iso_3_len_914_ver_3  83 PWSLTEVVKLVEGVARYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 131
                                         8****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.09276135IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-1478136IPR009057Homeodomain-like
SMARTSM007171.1E-880133IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-1682140IPR009057Homeodomain-like
CDDcd116601.79E-1982132No hitNo description
PfamPF002492.2E-783131IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
XRLCSFTNFY YLVRQQNRSK SLYLSSXLIA VSEEGKHHPE RIVEHENDIE LKSMNSFGYK  60
SDDSNVVNMP APMGGMRRKH HRPWSLTEVV KLVEGVARYG AGRWSEIKRL AFASYSYRTS  120
VDLKDKWRNL LRASLTQLPA ENGMQNSRKH ASIPIPAPIL LRVRELAETQ AQVPPNISSS  180
KFAGHSGGTD RNSQETRPGY L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125614.14e-86uncharacterized protein LOC113742105 isoform X2
TrEMBLA0A068VKU61e-83A0A068VKU6_COFCA; Uncharacterized protein
STRINGXP_010261948.12e-68(Nelumbo nucifera)