PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8255_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 633aa MW: 69727.9 Da PI: 7.8392

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8255_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.4	1.7e-08	515	563	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +W+ E +lv++v+++G g+W+ I r Rt ++k++w+++l cra_locus_8255_iso_4_len_2211_ver_3 515 PWSLTEVVKLVEGVARYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 563 8**************************9999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.092	508	567	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-13	510	568	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-8	512	565	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.09E-15	514	571	IPR009057	Homeodomain-like
CDD	cd11660	2.08E-18	514	564	No hit	No description
Pfam	PF00249	1.2E-6	515	563	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence Send to blast
GVLDCSFPNG SSVEIVYLCL LDSISXVDGD GRLVPATDDE VMVVEDLLKD DKSEVHFAAK 60 NQSIDTTKRS LPETAHSNCS GGQPGNLDVG ATILNIHGDP SMERREAKRI RKPTKRYIEE 120 TSDVGSRESN GRLVSLVELG KRIAHQEEST RSEGMNTSQS QNLEACSSSQ GRSIGIDAST 180 SGGSITKPDF SMLKGEICLD NLSIKDLQET FKATFGRETS VKDKQWLKRR IAMGLTNSCD 240 FSTTTFIIED NRVVKMFKGE TSKSSAASED LIAEAGNQTS GGLTDVCDKE INVHSDSDAK 300 RPESSLLECN SVGEDPNVEQ RVAKRVRKPT KRYIEEISEG ESRESSGRMI TLVRSPESGQ 360 QSAKSVVRPF HHSQQEGRPT VTRQDSFGGS GVQVPFVSRV RRSRPRENFM TLAKLQLDDI 420 GTSAKVVKKA FEEPARMAHD DAGNNVLKAS LSPKWIGQPL IAVSEEGKHH PERIVEHEND 480 IELKSMNSFG YKSDDSNVVN MPAPMGGMRR KHHRPWSLTE VVKLVEGVAR YGAGRWSEIK 540 RLAFASYSYR TSVDLKDKWR NLLRASLTQL PAENGMQNSR KHASIPIPAP ILLRVRELAE 600 TQAQVPPNIS SSKFAGHSGG TDRNSQETRP GYL

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence Send to blast

GVLDCSFPNG SSVEIVYLCL LDSISXVDGD GRLVPATDDE VMVVEDLLKD DKSEVHFAAK  60
NQSIDTTKRS LPETAHSNCS GGQPGNLDVG ATILNIHGDP SMERREAKRI RKPTKRYIEE  120
TSDVGSRESN GRLVSLVELG KRIAHQEEST RSEGMNTSQS QNLEACSSSQ GRSIGIDAST  180
SGGSITKPDF SMLKGEICLD NLSIKDLQET FKATFGRETS VKDKQWLKRR IAMGLTNSCD  240
FSTTTFIIED NRVVKMFKGE TSKSSAASED LIAEAGNQTS GGLTDVCDKE INVHSDSDAK  300
RPESSLLECN SVGEDPNVEQ RVAKRVRKPT KRYIEEISEG ESRESSGRMI TLVRSPESGQ  360
QSAKSVVRPF HHSQQEGRPT VTRQDSFGGS GVQVPFVSRV RRSRPRENFM TLAKLQLDDI  420
GTSAKVVKKA FEEPARMAHD DAGNNVLKAS LSPKWIGQPL IAVSEEGKHH PERIVEHEND  480
IELKSMNSFG YKSDDSNVVN MPAPMGGMRR KHHRPWSLTE VVKLVEGVAR YGAGRWSEIK  540
RLAFASYSYR TSVDLKDKWR NLLRASLTQL PAENGMQNSR KHASIPIPAP ILLRVRELAE  600
TQAQVPPNIS SSKFAGHSGG TDRNSQETRP GYL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027167787.1	0.0	uncharacterized protein LOC113767790 isoform X1
TrEMBL	A0A2R6PW01	0.0	A0A2R6PW01_ACTCH; Telomere repeat-binding protein
STRING	PGSC0003DMT400006342	1e-176	(Solanum tuberosum)