PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8255_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 601aa MW: 66286.3 Da PI: 7.0313

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8255_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.4	1.6e-08	531	579	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +W+ E +lv++v+++G g+W+ I r Rt ++k++w+++l cra_locus_8255_iso_5_len_3016_ver_3 531 PWSLTEVVKLVEGVARYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 579 8**************************9999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.092	524	583	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-13	526	584	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-8	528	581	IPR001005	SANT/Myb domain
CDD	cd11660	3.49E-18	530	580	No hit	No description
SuperFamily	SSF46689	9.36E-16	530	588	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-6	531	579	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence Send to blast
METVVGVEGN DEAKADNLAS DAVSDLTFLN PVSDPVVYKL VRVDGDGRLV PATDDEVMVV 60 EDLLKDDKSE VHFAAKNQSI DTTKRSLPET AHSNCSGGQP GNLDVGATIL NIHGDPSMER 120 REAKRIRKPT KRYIEETSDV GSRESNGRLV SLVELGKRIA HQEESTRSEG MNTSQSQNLE 180 ACSSSQGRSI GIDASTSGGS ITKPDFSMLK GEICLDNLSI KDLQETFKAT FGRETSVKDK 240 QWLKRRIAMG LTNSCDFSTT TFIIEDNRVV KMFKGETSKS SAASEDLIAE AGNQTSGGLT 300 DVCDKEINVH SDSDAKRPES SLLECNSVGE DPNVEQRVAK RVRKPTKRYI EEISEGESRE 360 SSGRMITLVR SPESGQQSAK SVVRPFHHSQ QEGRPTVTRQ DSFGGSGVQV PFVSRVRRSR 420 PRENFMTLAK LQLDDIGTSA KVVKKAFEEP ARMAHDDAGN NVLKASLSPK WIGQPLIAVS 480 EEGKHHPERI VEHENDIELK SMNSFGYKSD DSNVVNMPAP MGGMRRKHHR PWSLTEVVKL 540 VEGVARYGAG RWSEIKRLAF ASYSYRTSVD LKDKWRNLLR ASLTQLPAEN GVSRLICTLH 600 V

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence Send to blast

METVVGVEGN DEAKADNLAS DAVSDLTFLN PVSDPVVYKL VRVDGDGRLV PATDDEVMVV  60
EDLLKDDKSE VHFAAKNQSI DTTKRSLPET AHSNCSGGQP GNLDVGATIL NIHGDPSMER  120
REAKRIRKPT KRYIEETSDV GSRESNGRLV SLVELGKRIA HQEESTRSEG MNTSQSQNLE  180
ACSSSQGRSI GIDASTSGGS ITKPDFSMLK GEICLDNLSI KDLQETFKAT FGRETSVKDK  240
QWLKRRIAMG LTNSCDFSTT TFIIEDNRVV KMFKGETSKS SAASEDLIAE AGNQTSGGLT  300
DVCDKEINVH SDSDAKRPES SLLECNSVGE DPNVEQRVAK RVRKPTKRYI EEISEGESRE  360
SSGRMITLVR SPESGQQSAK SVVRPFHHSQ QEGRPTVTRQ DSFGGSGVQV PFVSRVRRSR  420
PRENFMTLAK LQLDDIGTSA KVVKKAFEEP ARMAHDDAGN NVLKASLSPK WIGQPLIAVS  480
EEGKHHPERI VEHENDIELK SMNSFGYKSD DSNVVNMPAP MGGMRRKHHR PWSLTEVVKL  540
VEGVARYGAG RWSEIKRLAF ASYSYRTSVD LKDKWRNLLR ASLTQLPAEN GVSRLICTLH  600
V

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027167787.1	0.0	uncharacterized protein LOC113767790 isoform X1
TrEMBL	A0A2R6PW01	1e-167	A0A2R6PW01_ACTCH; Telomere repeat-binding protein
STRING	VIT_09s0002g01480.t01	1e-163	(Vitis vinifera)
STRING	PGSC0003DMT400006342	1e-163	(Solanum tuberosum)