PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8261_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 77aa    MW: 8118.37 Da    PI: 8.6582
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8261_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.16.6e-222471559
                                        -TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                WRKY 15 vkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                                         kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  cra_locus_8261_iso_7_len_614_ver_3  2 AKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSVLITTYEGTHNHP 47
                                        59*******************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.964149IPR003657WRKY domain
SMARTSM007744.4E-18148IPR003657WRKY domain
PfamPF031062.9E-18247IPR003657WRKY domain
SuperFamilySSF1182901.57E-18249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-21249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MAKGNPCPRA YYRCTMAVGC PVRKQVQRCA EDRSVLITTY EGTHNHPLPP AAMAMASTTS  60
AAANMLLSGS MSSADGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-162512876WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263115.12e-48PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC32e-43WRK42_ARATH; WRKY transcription factor 42
TrEMBLA9RAB71e-48A9RAB7_9GENT; WRKY1-1 (Fragment)
TrEMBLA9RAC11e-48A9RAC1_9GENT; WRKY1 (Fragment)
TrEMBLA9RAC39e-49A9RAC3_9GENT; WRKY1 (Fragment)
TrEMBLA9RAC51e-48A9RAC5_9GENT; WRKY1-1 (Fragment)
STRINGVIT_10s0116g01200.t019e-48(Vitis vinifera)