PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8285_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 124aa    MW: 13608 Da    PI: 3.8938
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8285_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA369.3e-121241235
                                GATA 12 WRrgpdgnktLCnaCGlyyrkkgl 35
                                        +Rrgp g++tLCnaCGl+++ kg+
  cra_locus_8285_iso_2_len_719_ver_3  1 MRRGPAGPRTLCNACGLMWANKGT 24
                                        5********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002021.51E-11134No hitNo description
SMARTSM004010.0042135IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.2E-10129IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.4E-9124IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-6133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MRRGPAGPRT LCNACGLMWA NKGTLRDLSK GAKPSPFDQS ELDMSDIKSC MMETENSYHN  60
QNEEDLLEAA EGLAEDSSIV MGNPSMKLDD QENLEELANA SGSELEIPAN FDEQVWLSSN  120
PDLI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106173.12e-51GATA transcription factor 19-like isoform X2
RefseqXP_027106175.11e-51GATA transcription factor 19-like isoform X4
TrEMBLA0A068TMB96e-50A0A068TMB9_COFCA; Uncharacterized protein
STRINGXP_009776483.14e-42(Nicotiana sylvestris)