PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8285_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 149aa    MW: 16293 Da    PI: 4.1378
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8285_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43e-161349135
                                GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                                        C +Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  cra_locus_8285_iso_3_len_627_ver_3 13 CNHCGVSEneTPAMRRGPAGPRTLCNACGLMWANKGT 49
                                        **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.23E-12457No hitNo description
SMARTSM004013.2E-11760IPR000679Zinc finger, GATA-type
CDDcd002024.71E-161259No hitNo description
Gene3DG3DSA:3.30.50.106.3E-151254IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034401340IPR000679Zinc finger, GATA-type
PfamPF003203.9E-141349IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
HGTRAEGHVL QRCNHCGVSE NETPAMRRGP AGPRTLCNAC GLMWANKGTL RDLSKGAKPS  60
PFDQSELDMS DIKSCMMETE NSYHNQNEED LLEAAEGLAE DSSIVMGNPS MKLDDQENLE  120
ELANASGSEL EIPANFDEQV WLSSNPDLI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106173.19e-63GATA transcription factor 19-like isoform X2
RefseqXP_027106175.19e-63GATA transcription factor 19-like isoform X4
RefseqXP_027158766.11e-62GATA transcription factor 19-like isoform X2
TrEMBLA0A068TMB94e-61A0A068TMB9_COFCA; Uncharacterized protein
STRINGXP_009776483.14e-53(Nicotiana sylvestris)