PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8366_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

EIL

Protein Properties

Length: 98aa MW: 11329.5 Da PI: 5.893

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8366_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	147.6	1.7e-45	13	97	119	205
XXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.- CS EIN3 119 lsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtp 193 l++++ ++++ss h l+e+qDTtlgSLLsalmqhc ppqrrfple+g++pPWWPtG+elwwge+g+++++g+p cra_locus_8366_iso_1_len_291_ver_3 13 LEEHE--NMDPSSFIHLLQEIQDTTLGSLLSALMQHCVPPQRRFPLERGLPPPWWPTGEELWWGEQGMAHEHGPP 85 44444..4589************************************************************** PP ----GGG--HHH CS EIN3 194 pykkphdlkkaw 205 pyk phdlkkaw cra_locus_8366_iso_1_len_291_ver_3 86 PYKRPHDLKKAW 97 ********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	1.6E-44	2	97	No hit	No description
Gene3D	G3DSA:1.10.3180.10	3.0E-39	22	97	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	1.44E-34	25	97	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
XPAAIAEFLP KILEEHENMD PSSFIHLLQE IQDTTLGSLL SALMQHCVPP QRRFPLERGL 60 PPPWWPTGEE LWWGEQGMAH EHGPPPYKRP HDLKKAWX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	1e-35	26	97	4	75	Protein ETHYLENE INSENSITIVE 3
4zds_B	1e-35	26	97	4	75	Protein ETHYLENE INSENSITIVE 3
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090514.1	5e-51	LOW QUALITY PROTEIN: putative ETHYLENE INSENSITIVE 3-like 4 protein
Swissprot	Q9FJQ5	8e-45	EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBL	A0A2G9IAH0	9e-50	A0A2G9IAH0_9LAMI; Uncharacterized protein
STRING	EOX92159	3e-50	(Theobroma cacao)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]