PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8366_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family EIL
Protein Properties Length: 214aa    MW: 25012.4 Da    PI: 8.2023
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8366_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3138.21.2e-421102111111
                                         XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                                EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYg 75 
                                         ++lkkrmwkd+m +++lk ++       e++ +       ++ ++rkkm+raQD+iLkYM+k+m vcnaqGfvYg
  cra_locus_8366_iso_2_len_638_ver_3 110 DDLKKRMWKDRMHMQKLKAQRPI----PEPDPQ-----AKEDISKRKKMARAQDSILKYMVKIMDVCNAQGFVYG 175
                                         79*************99998885....455333.....34688899***************************** PP

                                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                                EIN3  76 iipekgkpvegasdsLraWWkekvefdrngpaaisk 111
                                         i+p+kgk+ +g+s+sLr+WWk kv+fd+ngpaai++
  cra_locus_8366_iso_2_len_638_ver_3 176 IVPDKGKTITGSSESLREWWKAKVRFDQNGPAAIAE 211
                                         **********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048732.6E-42110211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
XHSSDEYPRE GKSVQTMVTA DMREPELVYP WIFLDMKIIH SHRHSSSLFK PSYLCEFSRT  60
KLYFALIIRV IVFVSVKAKM VKFDEEIFEP LSPSSEIEDQ EFEAEDISYD DLKKRMWKDR  120
MHMQKLKAQR PIPEPDPQAK EDISKRKKMA RAQDSILKYM VKIMDVCNAQ GFVYGIVPDK  180
GKTITGSSES LREWWKAKVR FDQNGPAAIA EFLX
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792280.15e-55PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX162e-40EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A1U7Y0I71e-53A0A1U7Y0I7_NICSY; putative ETHYLENE INSENSITIVE 3-like 4 protein
STRINGXP_009792280.12e-54(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]