PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8413_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 209aa MW: 24183.3 Da PI: 9.9943

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8413_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	93.6	2.5e-29	43	130	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gk cra_locus_8413_iso_1_len_1854_ver_3 43 FYNAYATKVGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGK 114 ****************************************9988..9********************* PP FAR1 76 wevtkleleHnHelap 91 w+vtk+++eH+H+l+p cra_locus_8413_iso_1_len_1854_ver_3 115 WVVTKFVKEHTHPLTP 130 ***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-26	43	130	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
IDEDLSRTQI VPLEEPQTVN NSASNDEPYV GQEFESEAAA HAFYNAYATK VGFVIRVSKL 60 SRSRRDGSAI GRALVCNKEG FRMPDKREKI VRQRAETRVG CRAMILVRKV SSGKWVVTKF 120 VKEHTHPLTP GKGRKDLIYD QYPNEHDKIR ELTQQLAVEK KRAATYKRHL EMIFEHIEEH 180 NQSLSKKIQN IVNNVREMES KELQSRRXC

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027119573.1	1e-134	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_027156270.1	1e-134	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_027156292.1	1e-134	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_027156293.1	1e-134	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	5e-26	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S4AQF2	1e-133	A0A1S4AQF2_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRING	XP_009605656.1	1e-133	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]