PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8413_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 255aa MW: 28941.4 Da PI: 7.664

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8413_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.9	3.9e-29	89	176	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gk cra_locus_8413_iso_4_len_1947_ver_3 89 FYNAYATKVGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGK 160 ****************************************9988..9********************* PP FAR1 76 wevtkleleHnHelap 91 w+vtk+++eH+H+l+p cra_locus_8413_iso_4_len_1947_ver_3 161 WVVTKFVKEHTHPLTP 176 ***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-26	89	176	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MDFDIDGDVN GEVVGSSIDI EGRTDDEDAI AGTSVDGALK QGLHIKIDED LSRTQIVPLE 60 EPQTVNNSAS NDEPYVGQEF ESEAAAHAFY NAYATKVGFV IRVSKLSRSR RDGSAIGRAL 120 VCNKEGFRMP DKREKIVRQR AETRVGCRAM ILVRKVSSGK WVVTKFVKEH THPLTPGKGR 180 KDLIYDQYPN EHDKIRELTQ QLAVEKKRAA TYKRHLEMIF EHIEEHNQSL SKKIQNIVNN 240 VREMESKELQ SRRXC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027119573.1	1e-158	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_027156270.1	1e-158	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_027156292.1	1e-158	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_027156293.1	1e-158	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A068V8N6	1e-155	A0A068V8N6_COFCA; Uncharacterized protein
STRING	Migut.H01929.1.p	1e-139	(Erythranthe guttata)