PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_84210_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 193aa MW: 21268.6 Da PI: 6.5033

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_84210_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	41.5	4.2e-13	3	31	100	128
NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g++ktLvfy grap+g+ktdW+mheyrl cra_locus_84210_iso_1_len_577_ver_3 3 IGMRKTLVFYIGRAPHGQKTDWIMHEYRL 31 8**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	23.341	1	51	IPR003441	NAC domain
SuperFamily	SSF101941	4.84E-18	2	51	IPR003441	NAC domain
Pfam	PF02365	6.1E-6	3	31	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
XRIGMRKTLV FYIGRAPHGQ KTDWIMHEYR LDDDNNEIQE DGWVVCRVFK KKNINRGGFQ 60 PIEAAAQEEH LAHMEVAAAA ATTSTLFMNP KLPNSGGALC DYTTFDNSMH LPQLLSPESA 120 AAAAAAHAHP AEKFGSDWSF LDKLLASHQG FDRSKCYPLS QFSDVPAPAP AAASSADHQK 180 FSCHYLLGSQ LDF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-15	2	53	113	167	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-15	2	53	113	167	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-15	2	53	113	167	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-15	2	53	113	167	NO APICAL MERISTEM PROTEIN
3swm_A	4e-15	2	53	116	170	NAC domain-containing protein 19
3swm_B	4e-15	2	53	116	170	NAC domain-containing protein 19
3swm_C	4e-15	2	53	116	170	NAC domain-containing protein 19
3swm_D	4e-15	2	53	116	170	NAC domain-containing protein 19
3swp_A	4e-15	2	53	116	170	NAC domain-containing protein 19
3swp_B	4e-15	2	53	116	170	NAC domain-containing protein 19
3swp_C	4e-15	2	53	116	170	NAC domain-containing protein 19
3swp_D	4e-15	2	53	116	170	NAC domain-containing protein 19
4dul_A	3e-15	2	53	113	167	NAC domain-containing protein 19
4dul_B	3e-15	2	53	113	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:19081078, ECO:0000269\|PubMed:20197506}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027343937.1	1e-56	protein SOMBRERO
Swissprot	Q9MA17	2e-29	SMB_ARATH; Protein SOMBRERO
TrEMBL	A0A068VFI3	1e-54	A0A068VFI3_COFCA; Uncharacterized protein
TrEMBL	B9S679	6e-55	B9S679_RICCO; NAC domain-containing protein, putative
STRING	XP_002521498.1	1e-55	(Ricinus communis)

Publications ? help Back to Top
Fendrych M, et al. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]