PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_84673_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 259aa MW: 28203.1 Da PI: 9.4085

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_84673_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51	3.9e-16	144	234	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegek 69 +W+++ +++Li+a + +l+rg+l++++W+ev++++ ++++++r+ +qCk++++ l+k+yk +k + cra_locus_84673_iso_1_len_774_ver_3 144 CWSEEATRTLIDAWGSHYLELNRGNLRQKHWQEVADAVnalhaHSKKLQRTDIQCKNRIDTLKKKYKVEKSKFI 217 7***************************************99**********************9999 PP trihelix 70 krtsessstcpyfdqle 86 + + + +s +p+f +l+ cra_locus_84673_iso_1_len_774_ver_3 218 ESNGRYVSPWPFFPSLD 234 99899999****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR01217	3.3E-10	10	22	No hit	No description
PRINTS	PR01217	3.3E-10	51	63	No hit	No description
PRINTS	PR01217	3.3E-10	92	113	No hit	No description
PRINTS	PR01217	3.3E-10	120	136	No hit	No description
Pfam	PF13837	8.6E-26	142	236	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-4	142	208	IPR009057	Homeodomain-like
PRINTS	PR01217	3.3E-10	244	256	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
XTAQTNTNWS SPTYDPIPVA LPTYTFSSFP HLLRRSASLS ISMPGRPASA SPPPSHSPNP 60 NSLSVTSSSS TSTSTSSHRS TADSTLMSDE DEAAPPPGST SDNPTSTATP SPPPRTITEL 120 APLPPPPLSS TTTRTPSFPV REDCWSEEAT RTLIDAWGSH YLELNRGNLR QKHWQEVADA 180 VNALHAHSKK LQRTDIQCKN RIDTLKKKYK VEKSKFIESN GRYVSPWPFF PSLDSLIGDN 240 FIKNAPTSPS PPPPKKNLA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016541575.1	1e-65	PREDICTED: LOW QUALITY PROTEIN: trihelix transcription factor ASIL1-like
TrEMBL	A0A1U8EE29	3e-64	A0A1U8EE29_CAPAN; LOW QUALITY PROTEIN: trihelix transcription factor ASIL1-like
STRING	XP_009760894.1	1e-61	(Nicotiana sylvestris)
STRING	XP_009614096.1	6e-62	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70